RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 DIEXFQ68CQ4 756 aaKnown RBP30.55■■■□□ 2.48
SHMT1-206ENST00000579558 JARID2Q92833 1246 aaPredicted RBP30.55■■■□□ 2.48
SHMT1-206ENST00000579558 E9PSI1 815 aa30.54■■■□□ 2.48
SHMT1-206ENST00000579558 CWF19L2Q2TBE0 894 aaKnown RBP30.53■■■□□ 2.48
SHMT1-206ENST00000579558 SP8Q8IXZ3 490 aa30.53■■■□□ 2.48
SHMT1-206ENST00000579558 NEURL1BA8MQ27 555 aa30.52■■■□□ 2.48
SHMT1-206ENST00000579558 VEGFAP15692 232 aaPredicted RBP30.52■■■□□ 2.48
SHMT1-206ENST00000579558 TMC4Q7Z404 712 aa30.52■■■□□ 2.48
SHMT1-206ENST00000579558 DNAAF4Q8WXU2 420 aa30.52■■■□□ 2.48
SHMT1-206ENST00000579558 WDR90Q96KV7 1748 aa30.52■■■□□ 2.48
SHMT1-206ENST00000579558 PDE8AO60658 829 aa30.51■■■□□ 2.47
SHMT1-206ENST00000579558 CDHR2Q9BYE9 1310 aa30.5■■■□□ 2.47
SHMT1-206ENST00000579558 DDNO94850 711 aaPredicted RBP30.5■■■□□ 2.47
SHMT1-206ENST00000579558 JDP2Q8WYK2 163 aa30.5■■■□□ 2.47
SHMT1-206ENST00000579558 CELF1Q92879 486 aaKnown RBP30.5■■■□□ 2.47
SHMT1-206ENST00000579558 SLFN5Q08AF3 891 aa30.49■■■□□ 2.47
SHMT1-206ENST00000579558 DPP8Q6V1X1 898 aaPredicted RBP30.49■■■□□ 2.47
SHMT1-206ENST00000579558 RBM46Q8TBY0 533 aaKnown RBP30.49■■■□□ 2.47
SHMT1-206ENST00000579558 ZNF541Q9H0D2 1346 aa30.48■■■□□ 2.47
SHMT1-206ENST00000579558 LARGE2Q8N3Y3 721 aa30.48■■■□□ 2.47
SHMT1-206ENST00000579558 MPNDQ8N594 471 aa30.48■■■□□ 2.47
SHMT1-206ENST00000579558 SUPT20HQ8NEM7 779 aa30.48■■■□□ 2.47
SHMT1-206ENST00000579558 LRRC37AA6NMS7 1700 aa30.47■■■□□ 2.47
SHMT1-206ENST00000579558 COL4A1P02462 1669 aa30.47■■■□□ 2.47
SHMT1-206ENST00000579558 CCDC152Q4G0S7 254 aa30.47■■■□□ 2.47
SHMT1-206ENST00000579558 MIER1Q8N108 512 aa30.47■■■□□ 2.47
SHMT1-206ENST00000579558 COL4A5P29400 1685 aa30.46■■■□□ 2.47
SHMT1-206ENST00000579558 POTECB2RU33 542 aa30.46■■■□□ 2.47
SHMT1-206ENST00000579558 FZD9O00144 591 aa30.46■■■□□ 2.47
SHMT1-206ENST00000579558 PPIP5K2O43314 1243 aa30.46■■■□□ 2.47
SHMT1-206ENST00000579558 LINS1Q8NG48 757 aa30.46■■■□□ 2.47
SHMT1-206ENST00000579558 RTFDC1Q9BY42 306 aaPredicted RBP30.46■■■□□ 2.47
SHMT1-206ENST00000579558 GCKRQ14397 625 aa30.45■■■□□ 2.47
SHMT1-206ENST00000579558 CDCA7LQ96GN5 454 aa30.45■■■□□ 2.47
SHMT1-206ENST00000579558 CCDC85AQ96PX6 553 aaPredicted RBP30.45■■■□□ 2.47
SHMT1-206ENST00000579558 SEC31BQ9NQW1 1179 aa30.45■■■□□ 2.47
SHMT1-206ENST00000579558 F6X3S4 739 aa30.44■■■□□ 2.46
SHMT1-206ENST00000579558 RPS8P62241 208 aaKnown RBP30.44■■■□□ 2.46
SHMT1-206ENST00000579558 AOC3Q16853 763 aa30.44■■■□□ 2.46
SHMT1-206ENST00000579558 UBE3BQ7Z3V4 1068 aa30.44■■■□□ 2.46
SHMT1-206ENST00000579558 VPS33BQ9H267 617 aa30.44■■■□□ 2.46
SHMT1-206ENST00000579558 H7C1W4 665 aa30.43■■■□□ 2.46
SHMT1-206ENST00000579558 HSPA6P17066 643 aa30.43■■■□□ 2.46
SHMT1-206ENST00000579558 CTSWP56202 376 aa30.43■■■□□ 2.46
SHMT1-206ENST00000579558 NIM1KQ8IY84 436 aa30.43■■■□□ 2.46
SHMT1-206ENST00000579558 MYH3P11055 1940 aa30.43■■■□□ 2.46
SHMT1-206ENST00000579558 EIF6P56537 245 aaKnown RBP30.42■■■□□ 2.46
SHMT1-206ENST00000579558 L3MBTL3Q96JM7 780 aaPredicted RBP30.41■■■□□ 2.46
SHMT1-206ENST00000579558 FSTL1Q12841 308 aa30.4■■■□□ 2.46
SHMT1-206ENST00000579558 NSFL1CQ9UNZ2 370 aaKnown RBP30.4■■■□□ 2.46
SHMT1-206ENST00000579558 DUOX1Q9NRD9 1551 aa30.4■■■□□ 2.46
SHMT1-206ENST00000579558 BEND3Q5T5X7 828 aa30.39■■■□□ 2.46
SHMT1-206ENST00000579558 SMC1BQ8NDV3 1235 aa30.39■■■□□ 2.46
SHMT1-206ENST00000579558 IQCA1LA6NCM1 817 aa30.38■■■□□ 2.45
SHMT1-206ENST00000579558 GPC2Q8N158 579 aa30.38■■■□□ 2.45
SHMT1-206ENST00000579558 TTLL11Q8NHH1 800 aa30.38■■■□□ 2.45
SHMT1-206ENST00000579558 SCN4AP35499 1836 aa30.38■■■□□ 2.45
SHMT1-206ENST00000579558 CASP7P55210 303 aa30.37■■■□□ 2.45
SHMT1-206ENST00000579558 GPSM2P81274 684 aa30.37■■■□□ 2.45
SHMT1-206ENST00000579558 KIAA2012Q0VF49 1180 aa30.37■■■□□ 2.45
SHMT1-206ENST00000579558 ANKRD18AQ8IVF6 992 aa30.37■■■□□ 2.45
SHMT1-206ENST00000579558 TRMT2AQ8IZ69 625 aaKnown RBP30.37■■■□□ 2.45
SHMT1-206ENST00000579558 MRPL50Q8N5N7 158 aaKnown RBP30.37■■■□□ 2.45
SHMT1-206ENST00000579558 GJA3Q9Y6H8 435 aa30.37■■■□□ 2.45
SHMT1-206ENST00000579558 PLA2G12BQ9BX93 195 aa30.36■■■□□ 2.45
SHMT1-206ENST00000579558 SLC4A10Q6U841 1118 aa30.35■■■□□ 2.45
SHMT1-206ENST00000579558 CDC5LQ99459 802 aaKnown RBP30.35■■■□□ 2.45
SHMT1-206ENST00000579558 GREM2Q9H772 168 aa30.35■■■□□ 2.45
SHMT1-206ENST00000579558 RTL9Q8NET4 1388 aa30.34■■■□□ 2.45
SHMT1-206ENST00000579558 C6orf229H3BNL8 230 aa30.34■■■□□ 2.45
SHMT1-206ENST00000579558 SSH1Q8WYL5 1049 aa30.34■■■□□ 2.45
SHMT1-206ENST00000579558 ZNRF3Q9ULT6 936 aa30.34■■■□□ 2.45
SHMT1-206ENST00000579558 LTBP1Q14766 1721 aa30.33■■■□□ 2.45
SHMT1-206ENST00000579558 TAF1DQ9H5J8 278 aaPredicted RBP30.33■■■□□ 2.45
SHMT1-206ENST00000579558 HACL1Q9UJ83 578 aa30.33■■■□□ 2.45
SHMT1-206ENST00000579558 WASHC4Q2M389 1173 aa30.32■■■□□ 2.44
SHMT1-206ENST00000579558 BCL2L13Q9BXK5 485 aa30.32■■■□□ 2.44
SHMT1-206ENST00000579558 POLLQ9UGP5 575 aa30.32■■■□□ 2.44
SHMT1-206ENST00000579558 SRCIN1Q9C0H9 1055 aa30.31■■■□□ 2.44
SHMT1-206ENST00000579558 ANKIB1Q9P2G1 1089 aa30.31■■■□□ 2.44
SHMT1-206ENST00000579558 SPEF2Q9C093 1822 aa30.31■■■□□ 2.44
SHMT1-206ENST00000579558 PTPRCP08575 1304 aa30.3■■■□□ 2.44
SHMT1-206ENST00000579558 ALDH1L1O75891 902 aa30.3■■■□□ 2.44
SHMT1-206ENST00000579558 APLP1P51693 650 aa30.3■■■□□ 2.44
SHMT1-206ENST00000579558 ALDH1L2Q3SY69 923 aa30.3■■■□□ 2.44
SHMT1-206ENST00000579558 TBC1D16Q8TBP0 767 aa30.3■■■□□ 2.44
SHMT1-206ENST00000579558 EYA3Q99504 573 aa30.3■■■□□ 2.44
SHMT1-206ENST00000579558 PODXL2Q9NZ53 605 aa30.3■■■□□ 2.44
SHMT1-206ENST00000579558 RIMBP2O15034 1052 aa30.29■■■□□ 2.44
SHMT1-206ENST00000579558 GRM8O00222 908 aa30.28■■■□□ 2.44
SHMT1-206ENST00000579558 UFL1O94874 794 aa30.28■■■□□ 2.44
SHMT1-206ENST00000579558 CSF1RP07333 972 aa30.28■■■□□ 2.44
SHMT1-206ENST00000579558 CT47B1P0C2W7 299 aaPredicted RBP30.28■■■□□ 2.44
SHMT1-206ENST00000579558 POTEIP0CG38 1075 aa30.28■■■□□ 2.44
SHMT1-206ENST00000579558 POTEJP0CG39 1038 aa30.28■■■□□ 2.44
SHMT1-206ENST00000579558 EPHX2P34913 555 aa30.28■■■□□ 2.44
SHMT1-206ENST00000579558 CXCL9Q07325 125 aa30.28■■■□□ 2.44
SHMT1-206ENST00000579558 FAM161AQ3B820 660 aa30.28■■■□□ 2.44
SHMT1-206ENST00000579558 SMC4Q9NTJ3 1288 aa30.28■■■□□ 2.44
SHMT1-206ENST00000579558 C9orf78Q9NZ63 289 aaPredicted RBP30.28■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms