RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 SIL1Q9H173 461 aa12.68□□□□□ -0.38
USP3-219ENST00000561326 STK32BQ9NY57 414 aa12.68□□□□□ -0.38
USP3-219ENST00000561326 DDX60Q8IY21 1712 aaKnown RBP12.68□□□□□ -0.38
USP3-219ENST00000561326 SOCS7O14512 581 aa12.67□□□□□ -0.38
USP3-219ENST00000561326 CIAO1O76071 339 aa12.67□□□□□ -0.38
USP3-219ENST00000561326 HCLS1P14317 486 aaPredicted RBP12.67□□□□□ -0.38
USP3-219ENST00000561326 IL15P40933 162 aaPredicted RBP12.67□□□□□ -0.38
USP3-219ENST00000561326 EZH2Q15910 746 aaKnown RBP12.67□□□□□ -0.38
USP3-219ENST00000561326 ILDR2Q71H61 639 aa12.67□□□□□ -0.38
USP3-219ENST00000561326 AMIGO3Q86WK7 504 aa12.67□□□□□ -0.38
USP3-219ENST00000561326 PLEKHM2Q8IWE5 1019 aa12.67□□□□□ -0.38
USP3-219ENST00000561326 C16orf71Q8IYS4 520 aaPredicted RBP12.67□□□□□ -0.38
USP3-219ENST00000561326 GPATCH3Q96I76 525 aa12.67□□□□□ -0.38
USP3-219ENST00000561326 IL1RAPL2Q9NP60 686 aa12.67□□□□□ -0.38
USP3-219ENST00000561326 COL24A1Q17RW2 1714 aa12.67□□□□□ -0.38
USP3-219ENST00000561326 CARMIL3Q8ND23 1372 aa12.67□□□□□ -0.38
USP3-219ENST00000561326 TUBGCP6Q96RT7 1819 aa12.67□□□□□ -0.38
USP3-219ENST00000561326 AK9Q5TCS8 1911 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 CASZ1Q86V15 1759 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 EYA2O00167 538 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 IFIT2P09913 472 aaKnown RBP12.66□□□□□ -0.38
USP3-219ENST00000561326 GYS1P13807 737 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 ITGA6P23229 1130 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 NFIXQ14938 502 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 FAM161AQ3B820 660 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 ERFEQ4G0M1 354 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 NUTM1Q86Y26 1132 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 KLHDC4Q8TBB5 520 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 NLRP3Q96P20 1036 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 OSBPL3Q9H4L5 887 aa12.66□□□□□ -0.38
USP3-219ENST00000561326 QSER1Q2KHR3 1735 aa12.65□□□□□ -0.38
USP3-219ENST00000561326 SASH1O94885 1247 aa12.65□□□□□ -0.38
USP3-219ENST00000561326 MX1P20591 662 aa12.65□□□□□ -0.38
USP3-219ENST00000561326 PDE1AP54750 535 aa12.65□□□□□ -0.38
USP3-219ENST00000561326 ZNF827Q17R98 1081 aa12.65□□□□□ -0.38
USP3-219ENST00000561326 BMP2KLQ5H9B9 411 aa12.65□□□□□ -0.38
USP3-219ENST00000561326 LDHAL6AQ6ZMR3 332 aa12.65□□□□□ -0.38
USP3-219ENST00000561326 GREM2Q9H772 168 aa12.65□□□□□ -0.38
USP3-219ENST00000561326 CEP126Q9P2H0 1117 aa12.65□□□□□ -0.38
USP3-219ENST00000561326 STAP2Q9UGK3 403 aa12.65□□□□□ -0.38
USP3-219ENST00000561326 AOX1Q06278 1338 aa12.64□□□□□ -0.39
USP3-219ENST00000561326 EIF5BO60841 1220 aaKnown RBP12.64□□□□□ -0.39
USP3-219ENST00000561326 TM4SF1P30408 202 aa12.64□□□□□ -0.39
USP3-219ENST00000561326 SF3B3Q15393 1217 aaKnown RBP12.64□□□□□ -0.39
USP3-219ENST00000561326 SLC15A2Q16348 729 aa12.64□□□□□ -0.39
USP3-219ENST00000561326 COL23A1Q86Y22 540 aaPredicted RBP12.64□□□□□ -0.39
USP3-219ENST00000561326 CNBD1Q8NA66 436 aa12.64□□□□□ -0.39
USP3-219ENST00000561326 CCDC85AQ96PX6 553 aaPredicted RBP12.64□□□□□ -0.39
USP3-219ENST00000561326 CDC5LQ99459 802 aaKnown RBP12.64□□□□□ -0.39
USP3-219ENST00000561326 GPR108Q9NPR9 543 aa12.64□□□□□ -0.39
USP3-219ENST00000561326 CNNM1Q9NRU3 951 aa12.64□□□□□ -0.39
USP3-219ENST00000561326 AKAP2Q9Y2D5 859 aa12.64□□□□□ -0.39
USP3-219ENST00000561326 RTL9Q8NET4 1388 aa12.64□□□□□ -0.39
USP3-219ENST00000561326 ERC2O15083 957 aa12.63□□□□□ -0.39
USP3-219ENST00000561326 SERPINB2P05120 415 aa12.63□□□□□ -0.39
USP3-219ENST00000561326 IGHMBP2P38935 993 aaKnown RBP12.63□□□□□ -0.39
USP3-219ENST00000561326 ST5P78524 1137 aa12.63□□□□□ -0.39
USP3-219ENST00000561326 TFCP2Q12800 502 aa12.63□□□□□ -0.39
USP3-219ENST00000561326 TTC22Q5TAA0 569 aa12.63□□□□□ -0.39
USP3-219ENST00000561326 ATG9AQ7Z3C6 839 aa12.63□□□□□ -0.39
USP3-219ENST00000561326 AACSQ86V21 672 aa12.63□□□□□ -0.39
USP3-219ENST00000561326 ZNF594Q96JF6 807 aaPredicted RBP12.63□□□□□ -0.39
USP3-219ENST00000561326 MPHOSPH8Q99549 860 aa12.63□□□□□ -0.39
USP3-219ENST00000561326 BACH2Q9BYV9 841 aa12.63□□□□□ -0.39
USP3-219ENST00000561326 TTC41PQ6P2S7 1318 aa12.62□□□□□ -0.39
USP3-219ENST00000561326 SPEF2Q9C093 1822 aa12.62□□□□□ -0.39
USP3-219ENST00000561326 DEFB132Q7Z7B7 95 aa12.62□□□□□ -0.39
USP3-219ENST00000561326 OTUD7AQ8TE49 926 aaPredicted RBP12.62□□□□□ -0.39
USP3-219ENST00000561326 ECHDC1Q9NTX5 307 aa12.62□□□□□ -0.39
USP3-219ENST00000561326 GLRX3O76003 335 aaKnown RBP12.61□□□□□ -0.39
USP3-219ENST00000561326 LRRC24Q50LG9 513 aa12.61□□□□□ -0.39
USP3-219ENST00000561326 TNNI3KQ59H18 835 aa12.61□□□□□ -0.39
USP3-219ENST00000561326 ANKRD18AQ8IVF6 992 aa12.61□□□□□ -0.39
USP3-219ENST00000561326 EAF2Q96CJ1 260 aaPredicted RBP12.61□□□□□ -0.39
USP3-219ENST00000561326 RIPOR2Q9Y4F9 1068 aa12.61□□□□□ -0.39
USP3-219ENST00000561326 PARP3Q9Y6F1 533 aa12.61□□□□□ -0.39
USP3-219ENST00000561326 FPGT-TNNI3KV9GXZ4 949 aa12.61□□□□□ -0.39
USP3-219ENST00000561326 TAF1P21675 1872 aa12.61□□□□□ -0.39
USP3-219ENST00000561326 MROH5Q6ZUA9 1318 aa12.61□□□□□ -0.39
USP3-219ENST00000561326 PNPLA7Q6ZV29 1317 aa12.61□□□□□ -0.39
USP3-219ENST00000561326 SALL3Q9BXA9 1300 aa12.61□□□□□ -0.39
USP3-219ENST00000561326 METTL24Q5JXM2 366 aa12.6□□□□□ -0.39
USP3-219ENST00000561326 CASC1Q6TDU7 716 aa12.6□□□□□ -0.39
USP3-219ENST00000561326 DDX46Q7L014 1031 aaKnown RBP12.6□□□□□ -0.39
USP3-219ENST00000561326 NEUROD6Q96NK8 337 aa12.6□□□□□ -0.39
USP3-219ENST00000561326 PUS3Q9BZE2 481 aaKnown RBP12.6□□□□□ -0.39
USP3-219ENST00000561326 POLRMTO00411 1230 aaKnown RBP12.59□□□□□ -0.39
USP3-219ENST00000561326 PRR5LQ6MZQ0 368 aa12.59□□□□□ -0.39
USP3-219ENST00000561326 CCDC8Q9H0W5 538 aaPredicted RBP12.59□□□□□ -0.39
USP3-219ENST00000561326 TSHZ2Q9NRE2 1034 aa12.59□□□□□ -0.39
USP3-219ENST00000561326 RIC1Q4ADV7 1423 aa12.59□□□□□ -0.39
USP3-219ENST00000561326 TRIM6-TRIM34B2RNG4 842 aa12.58□□□□□ -0.4
USP3-219ENST00000561326 CDC45O75419 566 aa12.58□□□□□ -0.4
USP3-219ENST00000561326 RPS8P62241 208 aaKnown RBP12.58□□□□□ -0.4
USP3-219ENST00000561326 C8orf34Q49A92 452 aa12.58□□□□□ -0.4
USP3-219ENST00000561326 GORABQ5T7V8 394 aa12.58□□□□□ -0.4
USP3-219ENST00000561326 SLC16A10Q8TF71 515 aa12.58□□□□□ -0.4
USP3-219ENST00000561326 RPGRQ92834 1020 aaKnown RBP12.58□□□□□ -0.4
USP3-219ENST00000561326 UPF2Q9HAU5 1272 aaKnown RBP12.58□□□□□ -0.4
USP3-219ENST00000561326 SEC31BQ9NQW1 1179 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 165 ms