RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 FER1L6Q2WGJ9 1857 aa13.18□□□□□ -0.3
CCDC88C-206ENST00000553437 IARSP41252 1262 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-206ENST00000553437 SP8Q8IXZ3 490 aa13.17□□□□□ -0.3
CCDC88C-206ENST00000553437 JARID2Q92833 1246 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-206ENST00000553437 ANKRD36CQ5JPF3 1778 aa13.17□□□□□ -0.3
CCDC88C-206ENST00000553437 NEURL1BA8MQ27 555 aa13.16□□□□□ -0.3
CCDC88C-206ENST00000553437 CWF19L2Q2TBE0 894 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-206ENST00000553437 DPY19L2Q6NUT2 758 aa13.16□□□□□ -0.3
CCDC88C-206ENST00000553437 CELF1Q92879 486 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-206ENST00000553437 RTFDC1Q9BY42 306 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-206ENST00000553437 E9PSI1 815 aa13.15□□□□□ -0.3
CCDC88C-206ENST00000553437 FZD9O00144 591 aa13.15□□□□□ -0.3
CCDC88C-206ENST00000553437 DDNO94850 711 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-206ENST00000553437 VEGFAP15692 232 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-206ENST00000553437 SLFN5Q08AF3 891 aa13.15□□□□□ -0.3
CCDC88C-206ENST00000553437 RBM46Q8TBY0 533 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-206ENST00000553437 CDHR2Q9BYE9 1310 aa13.14□□□□□ -0.31
CCDC88C-206ENST00000553437 ZNF541Q9H0D2 1346 aa13.14□□□□□ -0.31
CCDC88C-206ENST00000553437 H7C1W4 665 aa13.14□□□□□ -0.31
CCDC88C-206ENST00000553437 PDE8AO60658 829 aa13.14□□□□□ -0.31
CCDC88C-206ENST00000553437 HSP90B1P14625 803 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-206ENST00000553437 NEXNQ0ZGT2 675 aa13.14□□□□□ -0.31
CCDC88C-206ENST00000553437 FKBP5Q13451 457 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-206ENST00000553437 TMC4Q7Z404 712 aa13.14□□□□□ -0.31
CCDC88C-206ENST00000553437 DNAAF4Q8WXU2 420 aa13.14□□□□□ -0.31
CCDC88C-206ENST00000553437 CDCA7LQ96GN5 454 aa13.14□□□□□ -0.31
CCDC88C-206ENST00000553437 COL4A5P29400 1685 aa13.13□□□□□ -0.31
CCDC88C-206ENST00000553437 CAPN15O75808 1086 aa13.13□□□□□ -0.31
CCDC88C-206ENST00000553437 CASP7P55210 303 aa13.13□□□□□ -0.31
CCDC88C-206ENST00000553437 GCKRQ14397 625 aa13.13□□□□□ -0.31
CCDC88C-206ENST00000553437 DIEXFQ68CQ4 756 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-206ENST00000553437 TRMT2AQ8IZ69 625 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-206ENST00000553437 MIER1Q8N108 512 aa13.13□□□□□ -0.31
CCDC88C-206ENST00000553437 MPNDQ8N594 471 aa13.13□□□□□ -0.31
CCDC88C-206ENST00000553437 L3MBTL3Q96JM7 780 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-206ENST00000553437 TMX4Q9H1E5 349 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-206ENST00000553437 SEC31BQ9NQW1 1179 aa13.13□□□□□ -0.31
CCDC88C-206ENST00000553437 F6X3S4 739 aa13.12□□□□□ -0.31
CCDC88C-206ENST00000553437 RPS8P62241 208 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-206ENST00000553437 DPP8Q6V1X1 898 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-206ENST00000553437 C16orf71Q8IYS4 520 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-206ENST00000553437 LARGE2Q8N3Y3 721 aa13.12□□□□□ -0.31
CCDC88C-206ENST00000553437 LINS1Q8NG48 757 aa13.12□□□□□ -0.31
CCDC88C-206ENST00000553437 JDP2Q8WYK2 163 aa13.12□□□□□ -0.31
CCDC88C-206ENST00000553437 VPS33BQ9H267 617 aa13.12□□□□□ -0.31
CCDC88C-206ENST00000553437 COL4A1P02462 1669 aa13.12□□□□□ -0.31
CCDC88C-206ENST00000553437 DDX60Q8IY21 1712 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-206ENST00000553437 CACNA1SQ13698 1873 aa13.11□□□□□ -0.31
CCDC88C-206ENST00000553437 PPIP5K2O43314 1243 aa13.11□□□□□ -0.31
CCDC88C-206ENST00000553437 AOC3Q16853 763 aa13.11□□□□□ -0.31
CCDC88C-206ENST00000553437 CCDC152Q4G0S7 254 aa13.11□□□□□ -0.31
CCDC88C-206ENST00000553437 BEND3Q5T5X7 828 aa13.11□□□□□ -0.31
CCDC88C-206ENST00000553437 SUPT20HQ8NEM7 779 aa13.11□□□□□ -0.31
CCDC88C-206ENST00000553437 TTLL11Q8NHH1 800 aa13.11□□□□□ -0.31
CCDC88C-206ENST00000553437 CCDC85AQ96PX6 553 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-206ENST00000553437 TIAM2Q8IVF5 1701 aa13.1□□□□□ -0.31
CCDC88C-206ENST00000553437 CTSWP56202 376 aa13.1□□□□□ -0.31
CCDC88C-206ENST00000553437 KIAA2012Q0VF49 1180 aa13.1□□□□□ -0.31
CCDC88C-206ENST00000553437 FSTL1Q12841 308 aa13.1□□□□□ -0.31
CCDC88C-206ENST00000553437 UBE3BQ7Z3V4 1068 aa13.1□□□□□ -0.31
CCDC88C-206ENST00000553437 MRPL50Q8N5N7 158 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-206ENST00000553437 PLA2G12BQ9BX93 195 aa13.1□□□□□ -0.31
CCDC88C-206ENST00000553437 WDR90Q96KV7 1748 aa13.1□□□□□ -0.31
CCDC88C-206ENST00000553437 LAMB2P55268 1798 aa13.09□□□□□ -0.31
CCDC88C-206ENST00000553437 GPSM2P81274 684 aa13.09□□□□□ -0.31
CCDC88C-206ENST00000553437 COL13A1Q5TAT6 717 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-206ENST00000553437 NIM1KQ8IY84 436 aa13.09□□□□□ -0.31
CCDC88C-206ENST00000553437 GPC2Q8N158 579 aa13.09□□□□□ -0.31
CCDC88C-206ENST00000553437 GREM2Q9H772 168 aa13.09□□□□□ -0.31
CCDC88C-206ENST00000553437 POLLQ9UGP5 575 aa13.09□□□□□ -0.31
CCDC88C-206ENST00000553437 NSFL1CQ9UNZ2 370 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-206ENST00000553437 DICER1Q9UPY3 1922 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-206ENST00000553437 EIF6P56537 245 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-206ENST00000553437 DNAJC5GQ8N7S2 189 aa13.08□□□□□ -0.32
CCDC88C-206ENST00000553437 SMC1BQ8NDV3 1235 aa13.08□□□□□ -0.32
CCDC88C-206ENST00000553437 SSH1Q8WYL5 1049 aa13.08□□□□□ -0.32
CCDC88C-206ENST00000553437 TAF1DQ9H5J8 278 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-206ENST00000553437 PODXL2Q9NZ53 605 aa13.08□□□□□ -0.32
CCDC88C-206ENST00000553437 ZNRF3Q9ULT6 936 aa13.08□□□□□ -0.32
CCDC88C-206ENST00000553437 RTL9Q8NET4 1388 aa13.07□□□□□ -0.32
CCDC88C-206ENST00000553437 DUOX1Q9NRD9 1551 aa13.07□□□□□ -0.32
CCDC88C-206ENST00000553437 IQCA1LA6NCM1 817 aa13.07□□□□□ -0.32
CCDC88C-206ENST00000553437 SLC34A2O95436 690 aa13.07□□□□□ -0.32
CCDC88C-206ENST00000553437 CSF1RP07333 972 aa13.07□□□□□ -0.32
CCDC88C-206ENST00000553437 POTEIP0CG38 1075 aa13.07□□□□□ -0.32
CCDC88C-206ENST00000553437 POTEJP0CG39 1038 aa13.07□□□□□ -0.32
CCDC88C-206ENST00000553437 CXCL9Q07325 125 aa13.07□□□□□ -0.32
CCDC88C-206ENST00000553437 TBC1D16Q8TBP0 767 aa13.07□□□□□ -0.32
CCDC88C-206ENST00000553437 CCDC88AQ3V6T2 1871 aa13.07□□□□□ -0.32
CCDC88C-206ENST00000553437 YDJCA8MPS7 323 aa13.06□□□□□ -0.32
CCDC88C-206ENST00000553437 ALDH1L1O75891 902 aa13.06□□□□□ -0.32
CCDC88C-206ENST00000553437 SCNN1DP51172 638 aa13.06□□□□□ -0.32
CCDC88C-206ENST00000553437 ANKRD18AQ8IVF6 992 aa13.06□□□□□ -0.32
CCDC88C-206ENST00000553437 HACL1Q9UJ83 578 aa13.06□□□□□ -0.32
CCDC88C-206ENST00000553437 GJA3Q9Y6H8 435 aa13.06□□□□□ -0.32
CCDC88C-206ENST00000553437 C6orf229H3BNL8 230 aa13.05□□□□□ -0.32
CCDC88C-206ENST00000553437 APLP1P51693 650 aa13.05□□□□□ -0.32
CCDC88C-206ENST00000553437 FOXO4P98177 505 aa13.05□□□□□ -0.32
CCDC88C-206ENST00000553437 WASHC4Q2M389 1173 aa13.05□□□□□ -0.32
CCDC88C-206ENST00000553437 ALDH1L2Q3SY69 923 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms