RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 PANK1Q8TE04 598 aa26.96■■□□□ 1.91
NEK3-202ENST00000550841 N4BP2Q86UW6 1770 aaPredicted RBP26.95■■□□□ 1.9
NEK3-202ENST00000550841 HOXA10P31260 410 aaPredicted RBP26.95■■□□□ 1.9
NEK3-202ENST00000550841 CHMP4BQ9H444 224 aaKnown RBP26.95■■□□□ 1.9
NEK3-202ENST00000550841 CTSWP56202 376 aa26.94■■□□□ 1.9
NEK3-202ENST00000550841 DDX46Q7L014 1031 aaKnown RBP26.94■■□□□ 1.9
NEK3-202ENST00000550841 TTLL6Q8N841 843 aa26.94■■□□□ 1.9
NEK3-202ENST00000550841 CRAMP1Q96RY5 1269 aa26.94■■□□□ 1.9
NEK3-202ENST00000550841 C3orf67Q6ZVT6 689 aa26.93■■□□□ 1.9
NEK3-202ENST00000550841 DALRD3Q5D0E6 543 aaKnown RBP26.92■■□□□ 1.9
NEK3-202ENST00000550841 TTLL11Q8NHH1 800 aa26.92■■□□□ 1.9
NEK3-202ENST00000550841 DDX60Q8IY21 1712 aaKnown RBP26.92■■□□□ 1.9
NEK3-202ENST00000550841 CENPBP07199 599 aaPredicted RBP26.91■■□□□ 1.9
NEK3-202ENST00000550841 CSF1RP07333 972 aa26.91■■□□□ 1.9
NEK3-202ENST00000550841 MVPQ14764 893 aaKnown RBP26.91■■□□□ 1.9
NEK3-202ENST00000550841 SUCLG2Q96I99 432 aa26.91■■□□□ 1.9
NEK3-202ENST00000550841 MEIS3Q99687 375 aa26.91■■□□□ 1.9
NEK3-202ENST00000550841 DDX19BQ9UMR2 479 aa26.91■■□□□ 1.9
NEK3-202ENST00000550841 LAMB2P55268 1798 aa26.91■■□□□ 1.9
NEK3-202ENST00000550841 FOXO4P98177 505 aa26.9■■□□□ 1.9
NEK3-202ENST00000550841 SUPT16HQ9Y5B9 1047 aaKnown RBP26.9■■□□□ 1.9
NEK3-202ENST00000550841 ZBTB7BO15156 539 aaPredicted RBP26.89■■□□□ 1.9
NEK3-202ENST00000550841 BBOX1O75936 387 aa26.89■■□□□ 1.9
NEK3-202ENST00000550841 COG6Q9Y2V7 657 aa26.89■■□□□ 1.9
NEK3-202ENST00000550841 TNRC6CQ9HCJ0 1690 aaKnown RBP26.89■■□□□ 1.89
NEK3-202ENST00000550841 KIAA1551Q9HCM1 1747 aa26.88■■□□□ 1.89
NEK3-202ENST00000550841 GNAI2P04899 355 aa26.88■■□□□ 1.89
NEK3-202ENST00000550841 LMBR1LQ6UX01 489 aa26.88■■□□□ 1.89
NEK3-202ENST00000550841 WWC3Q9ULE0 1092 aa26.88■■□□□ 1.89
NEK3-202ENST00000550841 MYH3P11055 1940 aa26.87■■□□□ 1.89
NEK3-202ENST00000550841 C20orf194Q5TEA3 1177 aa26.87■■□□□ 1.89
NEK3-202ENST00000550841 BCS1LQ9Y276 419 aa26.87■■□□□ 1.89
NEK3-202ENST00000550841 RTL9Q8NET4 1388 aa26.86■■□□□ 1.89
NEK3-202ENST00000550841 GRAPQ13588 217 aa26.86■■□□□ 1.89
NEK3-202ENST00000550841 GRAPLQ8TC17 118 aaPredicted RBP26.86■■□□□ 1.89
NEK3-202ENST00000550841 KAZALD1Q96I82 304 aa26.86■■□□□ 1.89
NEK3-202ENST00000550841 CDC5LQ99459 802 aaKnown RBP26.86■■□□□ 1.89
NEK3-202ENST00000550841 BICC1Q9H694 974 aaKnown RBP26.86■■□□□ 1.89
NEK3-202ENST00000550841 CHMP3Q9Y3E7 222 aa26.86■■□□□ 1.89
NEK3-202ENST00000550841 DLEC1Q9Y238 1755 aa26.86■■□□□ 1.89
NEK3-202ENST00000550841 RABL6Q3YEC7 729 aaPredicted RBP26.85■■□□□ 1.89
NEK3-202ENST00000550841 EPHA10Q5JZY3 1008 aa26.85■■□□□ 1.89
NEK3-202ENST00000550841 TMC4Q7Z404 712 aa26.85■■□□□ 1.89
NEK3-202ENST00000550841 CCDC85AQ96PX6 553 aaPredicted RBP26.85■■□□□ 1.89
NEK3-202ENST00000550841 TMX4Q9H1E5 349 aaPredicted RBP26.85■■□□□ 1.89
NEK3-202ENST00000550841 GREM2Q9H772 168 aa26.85■■□□□ 1.89
NEK3-202ENST00000550841 ANKRD18BA2A2Z9 1011 aa26.84■■□□□ 1.89
NEK3-202ENST00000550841 RPS8P62241 208 aaKnown RBP26.84■■□□□ 1.89
NEK3-202ENST00000550841 IFIT5Q13325 482 aaKnown RBP26.84■■□□□ 1.89
NEK3-202ENST00000550841 CCDC57Q2TAC2 916 aa26.84■■□□□ 1.89
NEK3-202ENST00000550841 PRPF40BQ6NWY9 871 aaKnown RBP26.84■■□□□ 1.89
NEK3-202ENST00000550841 LRRFIP2Q9Y608 721 aaKnown RBP26.84■■□□□ 1.89
NEK3-202ENST00000550841 COL11A2P13942 1736 aaPredicted RBP26.84■■□□□ 1.89
NEK3-202ENST00000550841 ITGA6P23229 1130 aa26.83■■□□□ 1.89
NEK3-202ENST00000550841 SOGA3Q5TF21 947 aa26.83■■□□□ 1.89
NEK3-202ENST00000550841 ANKRD18AQ8IVF6 992 aa26.83■■□□□ 1.89
NEK3-202ENST00000550841 GPBP1L1Q9HC44 474 aaPredicted RBP26.83■■□□□ 1.89
NEK3-202ENST00000550841 CC2D2BQ6DHV5 1058 aa26.82■■□□□ 1.88
NEK3-202ENST00000550841 SEC31BQ9NQW1 1179 aa26.82■■□□□ 1.88
NEK3-202ENST00000550841 GOLGB1Q14789 3259 aaKnown RBP26.82■■□□□ 1.88
NEK3-202ENST00000550841 BRCA1P38398 1863 aaKnown RBP26.81■■□□□ 1.88
NEK3-202ENST00000550841 PPEF1O14829 653 aaPredicted RBP26.81■■□□□ 1.88
NEK3-202ENST00000550841 FAM161AQ3B820 660 aa26.81■■□□□ 1.88
NEK3-202ENST00000550841 GRIPAP1Q4V328 841 aa26.81■■□□□ 1.88
NEK3-202ENST00000550841 ANKRD44Q8N8A2 993 aa26.81■■□□□ 1.88
NEK3-202ENST00000550841 IGHMBP2P38935 993 aaKnown RBP26.8■■□□□ 1.88
NEK3-202ENST00000550841 CELF1Q92879 486 aaKnown RBP26.8■■□□□ 1.88
NEK3-202ENST00000550841 TAF7LQ5H9L4 462 aa26.79■■□□□ 1.88
NEK3-202ENST00000550841 SP8Q8IXZ3 490 aa26.79■■□□□ 1.88
NEK3-202ENST00000550841 C21orf2O43822 256 aa26.78■■□□□ 1.88
NEK3-202ENST00000550841 ZNF526Q8TF50 670 aaPredicted RBP26.78■■□□□ 1.88
NEK3-202ENST00000550841 C7orf43Q8WVR3 580 aa26.78■■□□□ 1.88
NEK3-202ENST00000550841 MPHOSPH8Q99549 860 aa26.78■■□□□ 1.88
NEK3-202ENST00000550841 ZBTB40Q9NUA8 1239 aa26.78■■□□□ 1.88
NEK3-202ENST00000550841 ATP6V0A2Q9Y487 856 aa26.78■■□□□ 1.88
NEK3-202ENST00000550841 SLX4Q8IY92 1834 aa26.78■■□□□ 1.88
NEK3-202ENST00000550841 BSDC1Q9NW68 430 aaPredicted RBP26.77■■□□□ 1.88
NEK3-202ENST00000550841 MTX1Q13505 466 aa26.76■■□□□ 1.87
NEK3-202ENST00000550841 RTKN2Q8IZC4 609 aa26.76■■□□□ 1.87
NEK3-202ENST00000550841 ZNF219Q9P2Y4 722 aaPredicted RBP26.76■■□□□ 1.87
NEK3-202ENST00000550841 CCDC93Q567U6 631 aa26.75■■□□□ 1.87
NEK3-202ENST00000550841 ARFGEF1Q9Y6D6 1849 aa26.74■■□□□ 1.87
NEK3-202ENST00000550841 ATP8B2P98198 1209 aa26.74■■□□□ 1.87
NEK3-202ENST00000550841 AAMPQ13685 434 aa26.74■■□□□ 1.87
NEK3-202ENST00000550841 SRGAP3O43295 1099 aa26.73■■□□□ 1.87
NEK3-202ENST00000550841 ARHGAP27Q6ZUM4 889 aa26.73■■□□□ 1.87
NEK3-202ENST00000550841 CRBNQ96SW2 442 aa26.73■■□□□ 1.87
NEK3-202ENST00000550841 TAF1P21675 1872 aa26.72■■□□□ 1.87
NEK3-202ENST00000550841 CACNA1SQ13698 1873 aa26.72■■□□□ 1.87
NEK3-202ENST00000550841 LDHAL6AQ6ZMR3 332 aa26.72■■□□□ 1.87
NEK3-202ENST00000550841 RPAP2Q8IXW5 612 aaPredicted RBP26.72■■□□□ 1.87
NEK3-202ENST00000550841 C1orf115Q9H7X2 142 aa26.72■■□□□ 1.87
NEK3-202ENST00000550841 ZNF594Q96JF6 807 aaPredicted RBP26.7■■□□□ 1.86
NEK3-202ENST00000550841 CNNM1Q9NRU3 951 aa26.7■■□□□ 1.86
NEK3-202ENST00000550841 FBXO3Q9UK99 471 aa26.7■■□□□ 1.86
NEK3-202ENST00000550841 RFX5P48382 616 aaPredicted RBP26.69■■□□□ 1.86
NEK3-202ENST00000550841 MPNDQ8N594 471 aa26.69■■□□□ 1.86
NEK3-202ENST00000550841 ANKRD2Q9GZV1 360 aa26.69■■□□□ 1.86
NEK3-202ENST00000550841 CEP85Q6P2H3 762 aa26.68■■□□□ 1.86
NEK3-202ENST00000550841 MINPP1Q9UNW1 487 aa26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms