RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TMEM63CQ9P1W3 806 aa18.32■□□□□ 0.52
CUX1-211ENST00000546411 PTH1RQ03431 593 aa18.32■□□□□ 0.52
CUX1-211ENST00000546411 CCAR1Q8IX12 1150 aaKnown RBP18.32■□□□□ 0.52
CUX1-211ENST00000546411 RAD50Q92878 1312 aa18.32■□□□□ 0.52
CUX1-211ENST00000546411 RANBP6O60518 1105 aaKnown RBP18.32■□□□□ 0.52
CUX1-211ENST00000546411 ATP2B2Q01814 1243 aa18.32■□□□□ 0.52
CUX1-211ENST00000546411 MAP3K12Q12852 859 aa18.32■□□□□ 0.52
CUX1-211ENST00000546411 IGSF1Q8N6C5 1336 aa18.32■□□□□ 0.52
CUX1-211ENST00000546411 USP6P35125 1406 aa18.31■□□□□ 0.52
CUX1-211ENST00000546411 RXRAP19793 462 aa18.31■□□□□ 0.52
CUX1-211ENST00000546411 BEND3Q5T5X7 828 aa18.31■□□□□ 0.52
CUX1-211ENST00000546411 SLC9C2Q5TAH2 1124 aa18.31■□□□□ 0.52
CUX1-211ENST00000546411 IL15P40933 162 aaPredicted RBP18.31■□□□□ 0.52
CUX1-211ENST00000546411 GCKRQ14397 625 aa18.31■□□□□ 0.52
CUX1-211ENST00000546411 CCDC112Q8NEF3 446 aa18.31■□□□□ 0.52
CUX1-211ENST00000546411 CLIP2Q9UDT6 1046 aa18.31■□□□□ 0.52
CUX1-211ENST00000546411 CFAP100Q494V2 611 aa18.31■□□□□ 0.52
CUX1-211ENST00000546411 ATP7BP35670 1465 aa18.31■□□□□ 0.52
CUX1-211ENST00000546411 METTL22Q9BUU2 404 aaPredicted RBP18.31■□□□□ 0.52
CUX1-211ENST00000546411 DDX19AQ9NUU7 478 aaKnown RBP18.31■□□□□ 0.52
CUX1-211ENST00000546411 KLHL10Q6JEL2 608 aa18.3■□□□□ 0.52
CUX1-211ENST00000546411 RASEFQ8IZ41 740 aa18.3■□□□□ 0.52
CUX1-211ENST00000546411 SLC52A2Q9HAB3 445 aa18.3■□□□□ 0.52
CUX1-211ENST00000546411 ANO6Q4KMQ2 910 aa18.3■□□□□ 0.52
CUX1-211ENST00000546411 ZNF771Q7L3S4 317 aaPredicted RBP18.3■□□□□ 0.52
CUX1-211ENST00000546411 PDIA4P13667 645 aaKnown RBP18.3■□□□□ 0.52
CUX1-211ENST00000546411 HSPA4P34932 840 aa18.3■□□□□ 0.52
CUX1-211ENST00000546411 HSP90AA4PQ58FG1 418 aa18.3■□□□□ 0.52
CUX1-211ENST00000546411 DNAJC25Q9H1X3 360 aa18.3■□□□□ 0.52
CUX1-211ENST00000546411 NCOA5Q9HCD5 579 aaKnown RBP18.3■□□□□ 0.52
CUX1-211ENST00000546411 SLC12A7Q9Y666 1083 aa18.3■□□□□ 0.52
CUX1-211ENST00000546411 GOLGA8AA7E2F4 631 aa18.29■□□□□ 0.52
CUX1-211ENST00000546411 SLC27A2O14975 620 aa18.29■□□□□ 0.52
CUX1-211ENST00000546411 IPO7O95373 1038 aaKnown RBP18.29■□□□□ 0.52
CUX1-211ENST00000546411 GLI2P10070 1586 aa18.29■□□□□ 0.52
CUX1-211ENST00000546411 HOXB7P09629 217 aa18.29■□□□□ 0.52
CUX1-211ENST00000546411 TNNI3KQ59H18 835 aa18.29■□□□□ 0.52
CUX1-211ENST00000546411 FPGT-TNNI3KV9GXZ4 949 aa18.29■□□□□ 0.52
CUX1-211ENST00000546411 IL2RBP14784 551 aa18.29■□□□□ 0.52
CUX1-211ENST00000546411 SEC62Q99442 399 aaKnown RBP18.29■□□□□ 0.52
CUX1-211ENST00000546411 TMEM67Q5HYA8 995 aa18.28■□□□□ 0.52
CUX1-211ENST00000546411 BABAM1Q9NWV8 329 aa18.28■□□□□ 0.52
CUX1-211ENST00000546411 ANO10Q9NW15 660 aa18.28■□□□□ 0.52
CUX1-211ENST00000546411 SETD1BQ9UPS6 1966 aaKnown RBP18.28■□□□□ 0.52
CUX1-211ENST00000546411 A0A1B0GUL7 405 aa18.28■□□□□ 0.52
CUX1-211ENST00000546411 NCOA7Q8NI08 942 aa18.28■□□□□ 0.52
CUX1-211ENST00000546411 TRIM34Q9BYJ4 488 aa18.28■□□□□ 0.52
CUX1-211ENST00000546411 SLC5A1P13866 664 aa18.27■□□□□ 0.52
CUX1-211ENST00000546411 MARCKSP29966 332 aaPredicted RBP18.27■□□□□ 0.52
CUX1-211ENST00000546411 IBTKQ9P2D0 1353 aaPredicted RBP18.27■□□□□ 0.52
CUX1-211ENST00000546411 MCM5P33992 734 aa18.27■□□□□ 0.52
CUX1-211ENST00000546411 A0A0D9SFI3 127 aa18.27■□□□□ 0.51
CUX1-211ENST00000546411 IARSP41252 1262 aaKnown RBP18.26■□□□□ 0.51
CUX1-211ENST00000546411 CCDC47Q96A33 483 aaKnown RBP18.26■□□□□ 0.51
CUX1-211ENST00000546411 SLC3A2P08195 630 aaKnown RBP18.26■□□□□ 0.51
CUX1-211ENST00000546411 METAP2P50579 478 aaKnown RBP eCLIP18.26■□□□□ 0.51
CUX1-211ENST00000546411 SLC26A6Q9BXS9 759 aa18.26■□□□□ 0.51
CUX1-211ENST00000546411 TLR7Q9NYK1 1049 aaKnown RBP18.26■□□□□ 0.51
CUX1-211ENST00000546411 CLASP1Q7Z460 1538 aa18.26■□□□□ 0.51
CUX1-211ENST00000546411 JAK2O60674 1132 aa18.26■□□□□ 0.51
CUX1-211ENST00000546411 ADCK5Q3MIX3 580 aa18.26■□□□□ 0.51
CUX1-211ENST00000546411 CCDC186Q7Z3E2 898 aa18.26■□□□□ 0.51
CUX1-211ENST00000546411 LUZP1Q86V48 1076 aa18.26■□□□□ 0.51
CUX1-211ENST00000546411 TULP4Q9NRJ4 1543 aa18.26■□□□□ 0.51
CUX1-211ENST00000546411 A2ML1A8K2U0 1454 aa18.25■□□□□ 0.51
CUX1-211ENST00000546411 NEURL1BA8MQ27 555 aa18.25■□□□□ 0.51
CUX1-211ENST00000546411 OTUD7BQ6GQQ9 843 aa18.25■□□□□ 0.51
CUX1-211ENST00000546411 ZKSCAN5Q9Y2L8 839 aa18.25■□□□□ 0.51
CUX1-211ENST00000546411 PTPDC1A2A3K4 754 aa18.25■□□□□ 0.51
CUX1-211ENST00000546411 PRC1O43663 620 aa18.25■□□□□ 0.51
CUX1-211ENST00000546411 BRD1O95696 1058 aa18.25■□□□□ 0.51
CUX1-211ENST00000546411 IKQ13123 557 aaPredicted RBP18.25■□□□□ 0.51
CUX1-211ENST00000546411 KIF24Q5T7B8 1368 aa18.24■□□□□ 0.51
CUX1-211ENST00000546411 ARAP3Q8WWN8 1544 aa18.24■□□□□ 0.51
CUX1-211ENST00000546411 CEP152O94986 1710 aa18.24■□□□□ 0.51
CUX1-211ENST00000546411 TTLL7Q6ZT98 887 aa18.24■□□□□ 0.51
CUX1-211ENST00000546411 ARHGAP31Q2M1Z3 1444 aa18.24■□□□□ 0.51
CUX1-211ENST00000546411 ME3Q16798 604 aa18.24■□□□□ 0.51
CUX1-211ENST00000546411 CAVIN4Q5BKX8 364 aa18.24■□□□□ 0.51
CUX1-211ENST00000546411 DHX32Q7L7V1 743 aaKnown RBP18.24■□□□□ 0.51
CUX1-211ENST00000546411 TYRO3Q06418 890 aa18.24■□□□□ 0.51
CUX1-211ENST00000546411 C17orf53Q8N3J3 647 aaPredicted RBP18.23■□□□□ 0.51
CUX1-211ENST00000546411 PLBD2Q8NHP8 589 aa18.23■□□□□ 0.51
CUX1-211ENST00000546411 MAP7D2Q96T17 732 aa18.23■□□□□ 0.51
CUX1-211ENST00000546411 TEX13AQ9BXU3 409 aaPredicted RBP18.23■□□□□ 0.51
CUX1-211ENST00000546411 ADGRB3O60242 1522 aa18.23■□□□□ 0.51
CUX1-211ENST00000546411 SFPQP23246 707 aaKnown RBP eCLIP18.23■□□□□ 0.511e-6■■■■□ 21.6
CUX1-211ENST00000546411 RPS6KB1P23443 525 aa18.23■□□□□ 0.51
CUX1-211ENST00000546411 CDC37L1Q7L3B6 337 aa18.23■□□□□ 0.51
CUX1-211ENST00000546411 GPT2Q8TD30 523 aa18.23■□□□□ 0.51
CUX1-211ENST00000546411 RNF113AO15541 343 aaKnown RBP18.23■□□□□ 0.51
CUX1-211ENST00000546411 MIGA1Q8NAN2 632 aa18.23■□□□□ 0.51
CUX1-211ENST00000546411 FAM200AQ8TCP9 573 aa18.23■□□□□ 0.51
CUX1-211ENST00000546411 NOC3LQ8WTT2 800 aaKnown RBP18.23■□□□□ 0.51
CUX1-211ENST00000546411 ZSCAN16Q9H4T2 348 aaPredicted RBP18.23■□□□□ 0.51
CUX1-211ENST00000546411 IRS4O14654 1257 aaPredicted RBP18.22■□□□□ 0.51
CUX1-211ENST00000546411 PNPLA6Q8IY17 1366 aa18.22■□□□□ 0.51
CUX1-211ENST00000546411 PLEKHG1Q9ULL1 1385 aa18.22■□□□□ 0.51
CUX1-211ENST00000546411 A0A0U1RQG5 324 aaPredicted RBP18.22■□□□□ 0.51
CUX1-211ENST00000546411 EYA2O00167 538 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms