RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-218	ENST00000546298	WDR90	Q96KV7	1748 aa		12.04	□□□□□ -0.48
YBX3-218	ENST00000546298	POTEI	P0CG38	1075 aa		12.04	□□□□□ -0.48
YBX3-218	ENST00000546298	POTEJ	P0CG39	1038 aa		12.04	□□□□□ -0.48
YBX3-218	ENST00000546298	JMY	Q8N9B5	988 aa		12.04	□□□□□ -0.48
YBX3-218	ENST00000546298	MYD88	Q99836	296 aa		12.04	□□□□□ -0.48
YBX3-218	ENST00000546298	METTL22	Q9BUU2	404 aa	Predicted RBP	12.04	□□□□□ -0.48
YBX3-218	ENST00000546298	PCCA	P05165	728 aa	Predicted RBP	12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	KIAA2012	Q0VF49	1180 aa		12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	NEXN	Q0ZGT2	675 aa		12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	AOC3	Q16853	763 aa		12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	TWISTNB	Q3B726	338 aa	Predicted RBP	12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	RTL5	Q5HYW3	569 aa	Predicted RBP	12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	KSR2	Q6VAB6	950 aa		12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	TSPYL6	Q8N831	410 aa		12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	TSR2	Q969E8	191 aa	Known RBP	12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	ZNF428	Q96B54	188 aa		12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	CREBZF	Q9NS37	354 aa		12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	CWC25	Q9NXE8	425 aa	Predicted RBP	12.03	□□□□□ -0.48
YBX3-218	ENST00000546298	NUP98	P52948	1817 aa		12.02	□□□□□ -0.48
YBX3-218	ENST00000546298	RPS8	P62241	208 aa	Known RBP	12.02	□□□□□ -0.49
YBX3-218	ENST00000546298	TNIP1	Q15025	636 aa		12.02	□□□□□ -0.49
YBX3-218	ENST00000546298	WDR63	Q8IWG1	891 aa		12.02	□□□□□ -0.49
YBX3-218	ENST00000546298	NSFL1C	Q9UNZ2	370 aa	Known RBP	12.02	□□□□□ -0.49
YBX3-218	ENST00000546298	MAP3K2	Q9Y2U5	619 aa		12.02	□□□□□ -0.49
YBX3-218	ENST00000546298	PDE8A	O60658	829 aa		12.01	□□□□□ -0.49
YBX3-218	ENST00000546298	CCDC152	Q4G0S7	254 aa		12.01	□□□□□ -0.49
YBX3-218	ENST00000546298	CIAPIN1	Q6FI81	312 aa		12.01	□□□□□ -0.49
YBX3-218	ENST00000546298	USP50	Q70EL3	339 aa	Predicted RBP	12.01	□□□□□ -0.49
YBX3-218	ENST00000546298	CNTROB	Q8N137	903 aa		12.01	□□□□□ -0.49
YBX3-218	ENST00000546298	CELF1	Q92879	486 aa	Known RBP	12.01	□□□□□ -0.49
YBX3-218	ENST00000546298	EYA3	Q99504	573 aa		12.01	□□□□□ -0.49
YBX3-218	ENST00000546298	TIAM2	Q8IVF5	1701 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	ARFGEF2	Q9Y6D5	1785 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	PI4KAP2	A4QPH2	592 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	C6orf229	H3BNL8	230 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	ITGBL1	O95965	494 aa	Predicted RBP	12	□□□□□ -0.49
YBX3-218	ENST00000546298	SLC4A2	P04920	1241 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	EPS15	P42566	896 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	SCNN1D	P51172	638 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	CXCL9	Q07325	125 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	WASHC4	Q2M389	1173 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	SLC51A	Q86UW1	340 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	PI4KAP1	Q8N8J0	262 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	BCL2L13	Q9BXK5	485 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	PASK	Q96RG2	1323 aa		12	□□□□□ -0.49
YBX3-218	ENST00000546298	TMEM88B	A6NKF7	163 aa		11.99	□□□□□ -0.49
YBX3-218	ENST00000546298	MAP1S	Q66K74	1059 aa	Predicted RBP	11.99	□□□□□ -0.49
YBX3-218	ENST00000546298	ADARB2	Q9NS39	739 aa	Known RBP	11.99	□□□□□ -0.49
YBX3-218	ENST00000546298	SALL2	Q9Y467	1007 aa	Predicted RBP	11.99	□□□□□ -0.49
YBX3-218	ENST00000546298	CDHR2	Q9BYE9	1310 aa		11.99	□□□□□ -0.49
YBX3-218	ENST00000546298	RAD17	O75943	681 aa		11.98	□□□□□ -0.49
YBX3-218	ENST00000546298	GPSM2	P81274	684 aa		11.98	□□□□□ -0.49
YBX3-218	ENST00000546298	ANKRD18A	Q8IVF6	992 aa		11.98	□□□□□ -0.49
YBX3-218	ENST00000546298	FAM9B	Q8IZU0	186 aa		11.98	□□□□□ -0.49
YBX3-218	ENST00000546298	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.98	□□□□□ -0.49
YBX3-218	ENST00000546298	MYH16	Q9H6N6	1097 aa		11.98	□□□□□ -0.49
YBX3-218	ENST00000546298	GPRC5D	Q9NZD1	345 aa		11.98	□□□□□ -0.49
YBX3-218	ENST00000546298	DICER1	Q9UPY3	1922 aa	Known RBP	11.98	□□□□□ -0.49
YBX3-218	ENST00000546298	FANCI	Q9NVI1	1328 aa		11.97	□□□□□ -0.49
YBX3-218	ENST00000546298		G3V3G9	751 aa		11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	VAMP4	O75379	141 aa		11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	GMPS	P49915	693 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	FLII	Q13045	1269 aa		11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	DCAF8	Q5TAQ9	597 aa		11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	IFFO2	Q5TF58	517 aa		11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	JARID2	Q92833	1246 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	CDC5L	Q99459	802 aa	Known RBP	11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	SEC31B	Q9NQW1	1179 aa		11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	PODXL2	Q9NZ53	605 aa		11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	ANKIB1	Q9P2G1	1089 aa		11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	MKRN1	Q9UHC7	482 aa	Known RBP	11.97	□□□□□ -0.49
YBX3-218	ENST00000546298	NEURL1B	A8MQ27	555 aa		11.96	□□□□□ -0.49
YBX3-218	ENST00000546298		H7C1D1	291 aa		11.96	□□□□□ -0.49
YBX3-218	ENST00000546298	RIMBP2	O15034	1052 aa		11.96	□□□□□ -0.49
YBX3-218	ENST00000546298	IGKV5-2	P06315	115 aa		11.96	□□□□□ -0.49
YBX3-218	ENST00000546298	FKBP5	Q13451	457 aa	Predicted RBP	11.96	□□□□□ -0.49
YBX3-218	ENST00000546298	G2E3	Q7L622	706 aa		11.96	□□□□□ -0.49
YBX3-218	ENST00000546298	TBC1D16	Q8TBP0	767 aa		11.96	□□□□□ -0.49
YBX3-218	ENST00000546298	POLL	Q9UGP5	575 aa		11.96	□□□□□ -0.49
YBX3-218	ENST00000546298	GGA1	Q9UJY5	639 aa		11.96	□□□□□ -0.49
YBX3-218	ENST00000546298	CCDC88A	Q3V6T2	1871 aa		11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	COL4A5	P29400	1685 aa		11.95	□□□□□ -0.5
YBX3-218	ENST00000546298		H7C1W4	665 aa		11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	UFL1	O94874	794 aa		11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	RPS12	P25398	132 aa	Known RBP	11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	CTSW	P56202	376 aa		11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	EXOSC9	Q06265	439 aa	Known RBP	11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	ZC3H15	Q8WU90	426 aa	Known RBP	11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	DNAAF4	Q8WXU2	420 aa		11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	DPF2	Q92785	391 aa		11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	DBNDD1	Q9H9R9	158 aa		11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	CNOT7	Q9UIV1	285 aa	Known RBP	11.95	□□□□□ -0.5
YBX3-218	ENST00000546298	CNTNAP1	P78357	1384 aa		11.94	□□□□□ -0.5
YBX3-218	ENST00000546298	YDJC	A8MPS7	323 aa		11.94	□□□□□ -0.5
YBX3-218	ENST00000546298	ECE2	O60344	883 aa		11.94	□□□□□ -0.5
YBX3-218	ENST00000546298	HSPA1A	P0DMV8	641 aa	Known RBP	11.94	□□□□□ -0.5
YBX3-218	ENST00000546298	HSPA1B	P0DMV9	641 aa	Known RBP	11.94	□□□□□ -0.5
YBX3-218	ENST00000546298	ATP2B4	P23634	1241 aa		11.94	□□□□□ -0.5
YBX3-218	ENST00000546298	GCKR	Q14397	625 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms