RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 NF2P35240 595 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 TXLNAP40222 546 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 FCHSD1Q86WN1 690 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 PLEKHF1Q96S99 279 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 TTC21AQ8NDW8 1320 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 TUBBP07437 444 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 CABS1Q96KC9 395 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 CALR3Q96L12 384 aaKnown RBP14.42□□□□□ -0.1
USP3-203ENST00000538686 PDE11AQ9HCR9 933 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 ANO2Q9NQ90 1003 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 MCM8Q9UJA3 840 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 AKAP2Q9Y2D5 859 aa14.42□□□□□ -0.1
USP3-203ENST00000538686 MYO3AQ8NEV4 1616 aa14.41□□□□□ -0.1
USP3-203ENST00000538686 ATXN2Q99700 1313 aaKnown RBP14.41□□□□□ -0.1
USP3-203ENST00000538686 GPTP24298 496 aa14.41□□□□□ -0.1
USP3-203ENST00000538686 USP5P45974 858 aa14.41□□□□□ -0.1
USP3-203ENST00000538686 GNL2Q13823 731 aaKnown RBP14.41□□□□□ -0.1
USP3-203ENST00000538686 TTC6Q86TZ1 520 aa14.41□□□□□ -0.1
USP3-203ENST00000538686 GBP3Q9H0R5 595 aa14.41□□□□□ -0.1
USP3-203ENST00000538686 PARP3Q9Y6F1 533 aa14.41□□□□□ -0.1
USP3-203ENST00000538686 KIAA0556O60303 1618 aa14.41□□□□□ -0.1
USP3-203ENST00000538686 MPHOSPH10O00566 681 aaKnown RBP14.4□□□□□ -0.1
USP3-203ENST00000538686 ZSCAN12O43309 604 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 NEBLO76041 1014 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 OTUD6BQ8N6M0 293 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 PRPF38AQ8NAV1 312 aaKnown RBP14.4□□□□□ -0.1
USP3-203ENST00000538686 CNNM3Q8NE01 707 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 ZSCAN31Q96LW9 406 aaPredicted RBP14.4□□□□□ -0.1
USP3-203ENST00000538686 CHUKO15111 745 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 HSPA4P34932 840 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 PPP2R3AQ06190 1150 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 VPS53Q5VIR6 699 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 KCNV1Q6PIU1 500 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 KAT2BQ92831 832 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 PRAM1Q96QH2 718 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 UPF3BQ9BZI7 483 aaKnown RBP14.4□□□□□ -0.1
USP3-203ENST00000538686 TRIM6Q9C030 488 aaPredicted RBP14.4□□□□□ -0.1
USP3-203ENST00000538686 NAT10Q9H0A0 1025 aaKnown RBP14.4□□□□□ -0.1
USP3-203ENST00000538686 SH2B1Q9NRF2 756 aaPredicted RBP14.4□□□□□ -0.1
USP3-203ENST00000538686 FAN1Q9Y2M0 1017 aa14.4□□□□□ -0.1
USP3-203ENST00000538686 PTPRTO14522 1441 aa14.39□□□□□ -0.11
USP3-203ENST00000538686 PDCP20941 246 aa14.39□□□□□ -0.11
USP3-203ENST00000538686 MAP3K9P80192 1104 aa14.39□□□□□ -0.11
USP3-203ENST00000538686 ICA1Q05084 483 aa14.39□□□□□ -0.11
USP3-203ENST00000538686 OTUD7AQ8TE49 926 aaPredicted RBP14.39□□□□□ -0.11
USP3-203ENST00000538686 INO80Q9ULG1 1556 aaPredicted RBP14.39□□□□□ -0.11
USP3-203ENST00000538686 ATP10DQ9P241 1426 aa14.39□□□□□ -0.11
USP3-203ENST00000538686 GNAI3P08754 354 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 MRPL12P52815 198 aaKnown RBP14.38□□□□□ -0.11
USP3-203ENST00000538686 PDE1AP54750 535 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 SCRN1Q12765 414 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 AP1ARQ63HQ0 302 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 TRIM65Q6PJ69 517 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 CWC27Q6UX04 472 aaKnown RBP14.38□□□□□ -0.11
USP3-203ENST00000538686 ERCC4Q92889 916 aaPredicted RBP14.38□□□□□ -0.11
USP3-203ENST00000538686 TTC14Q96N46 770 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 ANO10Q9NW15 660 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 TUBGCP6Q96RT7 1819 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 EBAG9O00559 213 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 HMMRO75330 724 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 GJB2P29033 226 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 ADCY2Q08462 1091 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 PREPLQ4J6C6 727 aaPredicted RBP14.38□□□□□ -0.11
USP3-203ENST00000538686 CTCFLQ8NI51 663 aaPredicted RBP14.38□□□□□ -0.11
USP3-203ENST00000538686 SH3GL3Q99963 347 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 JPH2Q9BR39 696 aaPredicted RBP14.38□□□□□ -0.11
USP3-203ENST00000538686 MRFAP1Q9Y605 127 aa14.38□□□□□ -0.11
USP3-203ENST00000538686 ZC3H13Q5T200 1668 aaKnown RBP14.38□□□□□ -0.11
USP3-203ENST00000538686 IPO7O95373 1038 aaKnown RBP14.37□□□□□ -0.11
USP3-203ENST00000538686 GNAI1P63096 354 aa14.37□□□□□ -0.11
USP3-203ENST00000538686 BEND6Q5SZJ8 279 aaPredicted RBP14.37□□□□□ -0.11
USP3-203ENST00000538686 ETAA1Q9NY74 926 aa14.37□□□□□ -0.11
USP3-203ENST00000538686 RAB21Q9UL25 225 aa14.37□□□□□ -0.11
USP3-203ENST00000538686 A0A1B0GUA9 196 aa14.37□□□□□ -0.11
USP3-203ENST00000538686 CHMLP26374 656 aa14.37□□□□□ -0.11
USP3-203ENST00000538686 CEP112Q8N8E3 955 aa14.37□□□□□ -0.11
USP3-203ENST00000538686 BICD2Q8TD16 824 aa14.37□□□□□ -0.11
USP3-203ENST00000538686 N4BP2L2Q92802 583 aaPredicted RBP14.37□□□□□ -0.11
USP3-203ENST00000538686 SPATA32Q96LK8 384 aa14.37□□□□□ -0.11
USP3-203ENST00000538686 PAIP2Q9BPZ3 127 aaKnown RBP14.37□□□□□ -0.11
USP3-203ENST00000538686 MAST1Q9Y2H9 1570 aa14.37□□□□□ -0.11
USP3-203ENST00000538686 ARHGEF40Q8TER5 1519 aa14.36□□□□□ -0.11
USP3-203ENST00000538686 EXOC5O00471 708 aa14.36□□□□□ -0.11
USP3-203ENST00000538686 VAMP4O75379 141 aa14.36□□□□□ -0.11
USP3-203ENST00000538686 NEFHP12036 1026 aa14.36□□□□□ -0.11
USP3-203ENST00000538686 INPP5BP32019 993 aa14.36□□□□□ -0.11
USP3-203ENST00000538686 LIG3P49916 1009 aa14.36□□□□□ -0.11
USP3-203ENST00000538686 NAIF1Q69YI7 327 aaPredicted RBP14.36□□□□□ -0.11
USP3-203ENST00000538686 CEP57L1Q8IYX8 460 aa14.36□□□□□ -0.11
USP3-203ENST00000538686 AFAP1L1Q8TED9 768 aa14.36□□□□□ -0.11
USP3-203ENST00000538686 NUCKS1Q9H1E3 243 aaKnown RBP14.36□□□□□ -0.11
USP3-203ENST00000538686 BICC1Q9H694 974 aaKnown RBP14.36□□□□□ -0.11
USP3-203ENST00000538686 ASXL2Q76L83 1435 aa14.35□□□□□ -0.11
USP3-203ENST00000538686 MCM6Q14566 821 aa14.35□□□□□ -0.11
USP3-203ENST00000538686 PLEKHO1Q53GL0 409 aaPredicted RBP14.35□□□□□ -0.11
USP3-203ENST00000538686 SPATS2Q86XZ4 545 aaKnown RBP14.35□□□□□ -0.11
USP3-203ENST00000538686 AMOTL1Q8IY63 956 aa14.35□□□□□ -0.11
USP3-203ENST00000538686 TDRD9Q8NDG6 1382 aaKnown RBP14.35□□□□□ -0.11
USP3-203ENST00000538686 VPS37CA5D8V6 355 aaPredicted RBP14.35□□□□□ -0.11
USP3-203ENST00000538686 AK2P54819 239 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms