RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 UTP14AQ9BVJ6 771 aaKnown RBP26.2■■□□□ 1.78
VPS28-212ENST00000530836 BACH2Q9BYV9 841 aa26.2■■□□□ 1.78
VPS28-212ENST00000530836 EXOC6BQ9Y2D4 811 aa26.2■■□□□ 1.78
VPS28-212ENST00000530836 C10orf71Q711Q0 1435 aa26.19■■□□□ 1.78
VPS28-212ENST00000530836 SURF6O75683 361 aaKnown RBP26.18■■□□□ 1.78
VPS28-212ENST00000530836 NTSR2O95665 410 aa26.18■■□□□ 1.78
VPS28-212ENST00000530836 ST5P78524 1137 aa26.18■■□□□ 1.78
VPS28-212ENST00000530836 PCCAP05165 728 aaPredicted RBP26.17■■□□□ 1.78
VPS28-212ENST00000530836 GTF2E1P29083 439 aaPredicted RBP26.17■■□□□ 1.78
VPS28-212ENST00000530836 CCDC24Q8N4L8 307 aa26.17■■□□□ 1.78
VPS28-212ENST00000530836 BRIP1Q9BX63 1249 aa26.17■■□□□ 1.78
VPS28-212ENST00000530836 ERC1Q8IUD2 1116 aa26.17■■□□□ 1.78
VPS28-212ENST00000530836 ZBTB38Q8NAP3 1195 aaPredicted RBP26.17■■□□□ 1.78
VPS28-212ENST00000530836 NRXN2Q9P2S2 1712 aa26.17■■□□□ 1.78
VPS28-212ENST00000530836 TGFB2P61812 414 aa26.16■■□□□ 1.78
VPS28-212ENST00000530836 NUTM1Q86Y26 1132 aa26.16■■□□□ 1.78
VPS28-212ENST00000530836 KIF1BPQ96EK5 621 aa26.16■■□□□ 1.78
VPS28-212ENST00000530836 TRMT112Q9UI30 125 aaKnown RBP26.16■■□□□ 1.78
VPS28-212ENST00000530836 ERFEQ4G0M1 354 aa26.15■■□□□ 1.78
VPS28-212ENST00000530836 ANKRD36CQ5JPF3 1778 aa26.15■■□□□ 1.78
VPS28-212ENST00000530836 NLGN2Q8NFZ4 835 aa26.14■■□□□ 1.78
VPS28-212ENST00000530836 APBB1O00213 710 aa26.14■■□□□ 1.77
VPS28-212ENST00000530836 CDHR2Q9BYE9 1310 aa26.13■■□□□ 1.77
VPS28-212ENST00000530836 BMP2KLQ5H9B9 411 aa26.13■■□□□ 1.77
VPS28-212ENST00000530836 EPHA10Q5JZY3 1008 aa26.13■■□□□ 1.77
VPS28-212ENST00000530836 PLEKHM2Q8IWE5 1019 aa26.13■■□□□ 1.77
VPS28-212ENST00000530836 PLA2G12BQ9BX93 195 aa26.13■■□□□ 1.77
VPS28-212ENST00000530836 SH3TC1Q8TE82 1336 aa26.12■■□□□ 1.77
VPS28-212ENST00000530836 PDE6BP35913 854 aa26.12■■□□□ 1.77
VPS28-212ENST00000530836 C8orf34Q49A92 452 aa26.12■■□□□ 1.77
VPS28-212ENST00000530836 SLC10A5Q5PT55 438 aa26.12■■□□□ 1.77
VPS28-212ENST00000530836 RBM19Q9Y4C8 960 aaKnown RBP26.12■■□□□ 1.77
VPS28-212ENST00000530836 FOXO4P98177 505 aa26.11■■□□□ 1.77
VPS28-212ENST00000530836 OS9Q13438 667 aaPredicted RBP26.11■■□□□ 1.77
VPS28-212ENST00000530836 SYNE4Q8N205 404 aa26.11■■□□□ 1.77
VPS28-212ENST00000530836 RHPN1Q8TCX5 695 aa26.11■■□□□ 1.77
VPS28-212ENST00000530836 FAM89AQ96GI7 184 aa26.11■■□□□ 1.77
VPS28-212ENST00000530836 A0A0G2JLW4 131 aa26.1■■□□□ 1.77
VPS28-212ENST00000530836 SMARCA5O60264 1052 aaPredicted RBP26.1■■□□□ 1.77
VPS28-212ENST00000530836 COPRSQ9NQ92 184 aa26.1■■□□□ 1.77
VPS28-212ENST00000530836 ABCC12Q96J65 1359 aa26.1■■□□□ 1.77
VPS28-212ENST00000530836 KLRG2A4D1S0 409 aaPredicted RBP26.1■■□□□ 1.77
VPS28-212ENST00000530836 DPEP1P16444 411 aa26.1■■□□□ 1.77
VPS28-212ENST00000530836 G3BP1Q13283 466 aaKnown RBP eCLIP26.1■■□□□ 1.77
VPS28-212ENST00000530836 JARID2Q92833 1246 aaPredicted RBP26.1■■□□□ 1.77
VPS28-212ENST00000530836 OSBPL3Q9H4L5 887 aa26.1■■□□□ 1.77
VPS28-212ENST00000530836 LMBR1LQ6UX01 489 aa26.09■■□□□ 1.77
VPS28-212ENST00000530836 HSP90B1P14625 803 aaKnown RBP26.08■■□□□ 1.77
VPS28-212ENST00000530836 KCNA3P22001 575 aa26.08■■□□□ 1.77
VPS28-212ENST00000530836 CHRNA5P30532 468 aa26.08■■□□□ 1.77
VPS28-212ENST00000530836 H0YIN7 160 aa26.07■■□□□ 1.76
VPS28-212ENST00000530836 C2CD5Q86YS7 1000 aa26.07■■□□□ 1.76
VPS28-212ENST00000530836 KIF13BQ9NQT8 1826 aa26.07■■□□□ 1.76
VPS28-212ENST00000530836 HCLS1P14317 486 aaPredicted RBP26.06■■□□□ 1.76
VPS28-212ENST00000530836 RTL5Q5HYW3 569 aaPredicted RBP26.06■■□□□ 1.76
VPS28-212ENST00000530836 C16orf71Q8IYS4 520 aaPredicted RBP26.06■■□□□ 1.76
VPS28-212ENST00000530836 RIC1Q4ADV7 1423 aa26.06■■□□□ 1.76
VPS28-212ENST00000530836 RFX5P48382 616 aaPredicted RBP26.06■■□□□ 1.76
VPS28-212ENST00000530836 CLASRPQ8N2M8 674 aaKnown RBP26.06■■□□□ 1.76
VPS28-212ENST00000530836 NLRP3Q96P20 1036 aa26.06■■□□□ 1.76
VPS28-212ENST00000530836 IRS4O14654 1257 aaPredicted RBP26.05■■□□□ 1.76
VPS28-212ENST00000530836 PA2G4Q9UQ80 394 aaKnown RBP26.05■■□□□ 1.76
VPS28-212ENST00000530836 AOX1Q06278 1338 aa26.05■■□□□ 1.76
VPS28-212ENST00000530836 SRGNP10124 158 aa26.04■■□□□ 1.76
VPS28-212ENST00000530836 PTPN12Q05209 780 aaKnown RBP26.04■■□□□ 1.76
VPS28-212ENST00000530836 STAP2Q9UGK3 403 aa26.04■■□□□ 1.76
VPS28-212ENST00000530836 SALL3Q9BXA9 1300 aa26.04■■□□□ 1.76
VPS28-212ENST00000530836 CSF1RP07333 972 aa26.03■■□□□ 1.76
VPS28-212ENST00000530836 PDE1AP54750 535 aa26.03■■□□□ 1.76
VPS28-212ENST00000530836 CRY2Q49AN0 593 aa26.03■■□□□ 1.76
VPS28-212ENST00000530836 TTC22Q5TAA0 569 aa26.03■■□□□ 1.76
VPS28-212ENST00000530836 MX1P20591 662 aa26.03■■□□□ 1.76
VPS28-212ENST00000530836 C3orf67Q6ZVT6 689 aa26.03■■□□□ 1.76
VPS28-212ENST00000530836 PIM2Q9P1W9 311 aa26.03■■□□□ 1.76
VPS28-212ENST00000530836 FBXO3Q9UK99 471 aa26.03■■□□□ 1.76
VPS28-212ENST00000530836 CHMP3Q9Y3E7 222 aa26.03■■□□□ 1.76
VPS28-212ENST00000530836 PDE8AO60658 829 aa26.02■■□□□ 1.76
VPS28-212ENST00000530836 MASTLQ96GX5 879 aa26.02■■□□□ 1.76
VPS28-212ENST00000530836 CCDC57Q2TAC2 916 aa26.01■■□□□ 1.75
VPS28-212ENST00000530836 OTUD7AQ8TE49 926 aaPredicted RBP26.01■■□□□ 1.75
VPS28-212ENST00000530836 IL1RAPL2Q9NP60 686 aa26.01■■□□□ 1.75
VPS28-212ENST00000530836 ANKRD31Q8N7Z5 1873 aa26■■□□□ 1.75
VPS28-212ENST00000530836 EIF5BO60841 1220 aaKnown RBP26■■□□□ 1.75
VPS28-212ENST00000530836 NPR1P16066 1061 aa26■■□□□ 1.75
VPS28-212ENST00000530836 STYK1Q6J9G0 422 aa26■■□□□ 1.75
VPS28-212ENST00000530836 ZNF622Q969S3 477 aaKnown RBP eCLIP26■■□□□ 1.752e-11■■■■■ 40.7
VPS28-212ENST00000530836 BCL11AQ9H165 835 aa25.99■■□□□ 1.75
VPS28-212ENST00000530836 CTSWP56202 376 aa25.99■■□□□ 1.75
VPS28-212ENST00000530836 SF3B3Q15393 1217 aaKnown RBP25.99■■□□□ 1.75
VPS28-212ENST00000530836 KIAA1551Q9HCM1 1747 aa25.98■■□□□ 1.75
VPS28-212ENST00000530836 CIAO1O76071 339 aa25.98■■□□□ 1.75
VPS28-212ENST00000530836 SASH1O94885 1247 aa25.98■■□□□ 1.75
VPS28-212ENST00000530836 HOXA10P31260 410 aaPredicted RBP25.98■■□□□ 1.75
VPS28-212ENST00000530836 GPATCH3Q96I76 525 aa25.98■■□□□ 1.75
VPS28-212ENST00000530836 SIL1Q9H173 461 aa25.98■■□□□ 1.75
VPS28-212ENST00000530836 WWC3Q9ULE0 1092 aa25.98■■□□□ 1.75
VPS28-212ENST00000530836 TTC41PQ6P2S7 1318 aa25.97■■□□□ 1.75
VPS28-212ENST00000530836 IFIT5Q13325 482 aaKnown RBP25.97■■□□□ 1.75
VPS28-212ENST00000530836 TTLL6Q8N841 843 aa25.97■■□□□ 1.75
VPS28-212ENST00000530836 RPGRQ92834 1020 aaKnown RBP25.97■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms