RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 DDNO94850 711 aaPredicted RBP26.73■■□□□ 1.87
VPS28-203ENST00000524521 CWF19L2Q2TBE0 894 aaKnown RBP26.72■■□□□ 1.87
VPS28-203ENST00000524521 JDP2Q8WYK2 163 aa26.72■■□□□ 1.87
VPS28-203ENST00000524521 TAF1P21675 1872 aa26.71■■□□□ 1.87
VPS28-203ENST00000524521 CACNA1FO60840 1977 aa26.7■■□□□ 1.86
VPS28-203ENST00000524521 NEURL1BA8MQ27 555 aa26.7■■□□□ 1.86
VPS28-203ENST00000524521 PDE8AO60658 829 aa26.7■■□□□ 1.86
VPS28-203ENST00000524521 DIEXFQ68CQ4 756 aaKnown RBP26.7■■□□□ 1.86
VPS28-203ENST00000524521 TMC4Q7Z404 712 aa26.7■■□□□ 1.86
VPS28-203ENST00000524521 LARGE2Q8N3Y3 721 aa26.7■■□□□ 1.86
VPS28-203ENST00000524521 MPNDQ8N594 471 aa26.7■■□□□ 1.86
VPS28-203ENST00000524521 RBM46Q8TBY0 533 aaKnown RBP26.7■■□□□ 1.86
VPS28-203ENST00000524521 DNAAF4Q8WXU2 420 aa26.7■■□□□ 1.86
VPS28-203ENST00000524521 CELF1Q92879 486 aaKnown RBP26.7■■□□□ 1.86
VPS28-203ENST00000524521 POTECB2RU33 542 aa26.69■■□□□ 1.86
VPS28-203ENST00000524521 E9PSI1 815 aa26.69■■□□□ 1.86
VPS28-203ENST00000524521 DPP8Q6V1X1 898 aaPredicted RBP26.69■■□□□ 1.86
VPS28-203ENST00000524521 FZD9O00144 591 aa26.68■■□□□ 1.86
VPS28-203ENST00000524521 SUPT20HQ8NEM7 779 aa26.68■■□□□ 1.86
VPS28-203ENST00000524521 ZNF541Q9H0D2 1346 aa26.67■■□□□ 1.86
VPS28-203ENST00000524521 HSPA6P17066 643 aa26.67■■□□□ 1.86
VPS28-203ENST00000524521 SLFN5Q08AF3 891 aa26.67■■□□□ 1.86
VPS28-203ENST00000524521 CCDC152Q4G0S7 254 aa26.67■■□□□ 1.86
VPS28-203ENST00000524521 CDHR2Q9BYE9 1310 aa26.66■■□□□ 1.86
VPS28-203ENST00000524521 PPIP5K2O43314 1243 aa26.66■■□□□ 1.86
VPS28-203ENST00000524521 RPS8P62241 208 aaKnown RBP26.66■■□□□ 1.86
VPS28-203ENST00000524521 CCDC85AQ96PX6 553 aaPredicted RBP26.66■■□□□ 1.86
VPS28-203ENST00000524521 SEC31BQ9NQW1 1179 aa26.66■■□□□ 1.86
VPS28-203ENST00000524521 WDR90Q96KV7 1748 aa26.65■■□□□ 1.86
VPS28-203ENST00000524521 F6X3S4 739 aa26.65■■□□□ 1.86
VPS28-203ENST00000524521 AOC3Q16853 763 aa26.65■■□□□ 1.86
VPS28-203ENST00000524521 MIER1Q8N108 512 aa26.65■■□□□ 1.86
VPS28-203ENST00000524521 LINS1Q8NG48 757 aa26.65■■□□□ 1.86
VPS28-203ENST00000524521 RTFDC1Q9BY42 306 aaPredicted RBP26.65■■□□□ 1.86
VPS28-203ENST00000524521 H7C1W4 665 aa26.64■■□□□ 1.86
VPS28-203ENST00000524521 EIF6P56537 245 aaKnown RBP26.64■■□□□ 1.86
VPS28-203ENST00000524521 GCKRQ14397 625 aa26.64■■□□□ 1.86
VPS28-203ENST00000524521 UBE3BQ7Z3V4 1068 aa26.64■■□□□ 1.86
VPS28-203ENST00000524521 NIM1KQ8IY84 436 aa26.64■■□□□ 1.86
VPS28-203ENST00000524521 CDCA7LQ96GN5 454 aa26.64■■□□□ 1.86
VPS28-203ENST00000524521 VPS33BQ9H267 617 aa26.64■■□□□ 1.86
VPS28-203ENST00000524521 FSTL1Q12841 308 aa26.63■■□□□ 1.85
VPS28-203ENST00000524521 NSFL1CQ9UNZ2 370 aaKnown RBP26.63■■□□□ 1.85
VPS28-203ENST00000524521 SMC1BQ8NDV3 1235 aa26.62■■□□□ 1.85
VPS28-203ENST00000524521 L3MBTL3Q96JM7 780 aaPredicted RBP26.62■■□□□ 1.85
VPS28-203ENST00000524521 COL4A5P29400 1685 aa26.62■■□□□ 1.85
VPS28-203ENST00000524521 CTSWP56202 376 aa26.61■■□□□ 1.85
VPS28-203ENST00000524521 GJA3Q9Y6H8 435 aa26.61■■□□□ 1.85
VPS28-203ENST00000524521 IQCA1LA6NCM1 817 aa26.6■■□□□ 1.85
VPS28-203ENST00000524521 GPC2Q8N158 579 aa26.6■■□□□ 1.85
VPS28-203ENST00000524521 TTLL11Q8NHH1 800 aa26.6■■□□□ 1.85
VPS28-203ENST00000524521 COL4A1P02462 1669 aa26.6■■□□□ 1.85
VPS28-203ENST00000524521 GPSM2P81274 684 aa26.59■■□□□ 1.85
VPS28-203ENST00000524521 KIAA2012Q0VF49 1180 aa26.59■■□□□ 1.85
VPS28-203ENST00000524521 BEND3Q5T5X7 828 aa26.59■■□□□ 1.85
VPS28-203ENST00000524521 ANKRD18AQ8IVF6 992 aa26.58■■□□□ 1.85
VPS28-203ENST00000524521 C6orf229H3BNL8 230 aa26.57■■□□□ 1.84
VPS28-203ENST00000524521 SLC4A10Q6U841 1118 aa26.57■■□□□ 1.84
VPS28-203ENST00000524521 MRPL50Q8N5N7 158 aaKnown RBP26.57■■□□□ 1.84
VPS28-203ENST00000524521 HACL1Q9UJ83 578 aa26.57■■□□□ 1.84
VPS28-203ENST00000524521 ZNRF3Q9ULT6 936 aa26.57■■□□□ 1.84
VPS28-203ENST00000524521 CASP7P55210 303 aa26.56■■□□□ 1.84
VPS28-203ENST00000524521 WASHC4Q2M389 1173 aa26.56■■□□□ 1.84
VPS28-203ENST00000524521 TRMT2AQ8IZ69 625 aaKnown RBP26.56■■□□□ 1.84
VPS28-203ENST00000524521 CDC5LQ99459 802 aaKnown RBP26.56■■□□□ 1.84
VPS28-203ENST00000524521 TAF1DQ9H5J8 278 aaPredicted RBP26.56■■□□□ 1.84
VPS28-203ENST00000524521 GREM2Q9H772 168 aa26.56■■□□□ 1.84
VPS28-203ENST00000524521 POLLQ9UGP5 575 aa26.56■■□□□ 1.84
VPS28-203ENST00000524521 LRRC37AA6NMS7 1700 aa26.56■■□□□ 1.84
VPS28-203ENST00000524521 APLP1P51693 650 aa26.55■■□□□ 1.84
VPS28-203ENST00000524521 PLA2G12BQ9BX93 195 aa26.55■■□□□ 1.84
VPS28-203ENST00000524521 ANKIB1Q9P2G1 1089 aa26.55■■□□□ 1.84
VPS28-203ENST00000524521 RIMBP2O15034 1052 aa26.54■■□□□ 1.84
VPS28-203ENST00000524521 POTEIP0CG38 1075 aa26.54■■□□□ 1.84
VPS28-203ENST00000524521 POTEJP0CG39 1038 aa26.54■■□□□ 1.84
VPS28-203ENST00000524521 SSH1Q8WYL5 1049 aa26.54■■□□□ 1.84
VPS28-203ENST00000524521 SCN4AP35499 1836 aa26.53■■□□□ 1.84
VPS28-203ENST00000524521 CXCL9Q07325 125 aa26.53■■□□□ 1.84
VPS28-203ENST00000524521 TBC1D16Q8TBP0 767 aa26.53■■□□□ 1.84
VPS28-203ENST00000524521 MYH3P11055 1940 aa26.52■■□□□ 1.84
VPS28-203ENST00000524521 EPHX2P34913 555 aa26.52■■□□□ 1.84
VPS28-203ENST00000524521 EAPPQ56P03 285 aaPredicted RBP26.52■■□□□ 1.84
VPS28-203ENST00000524521 EYA3Q99504 573 aa26.52■■□□□ 1.84
VPS28-203ENST00000524521 BCL2L13Q9BXK5 485 aa26.52■■□□□ 1.84
VPS28-203ENST00000524521 SRCIN1Q9C0H9 1055 aa26.52■■□□□ 1.84
VPS28-203ENST00000524521 DUOX1Q9NRD9 1551 aa26.52■■□□□ 1.84
VPS28-203ENST00000524521 PODXL2Q9NZ53 605 aa26.52■■□□□ 1.84
VPS28-203ENST00000524521 LMOD1P29536 600 aaPredicted RBP26.51■■□□□ 1.83
VPS28-203ENST00000524521 CHADLQ6NUI6 762 aa26.51■■□□□ 1.83
VPS28-203ENST00000524521 GPR101Q96P66 508 aaPredicted RBP26.51■■□□□ 1.83
VPS28-203ENST00000524521 RTL9Q8NET4 1388 aa26.5■■□□□ 1.83
VPS28-203ENST00000524521 ALDH1L1O75891 902 aa26.5■■□□□ 1.83
VPS28-203ENST00000524521 RAD17O75943 681 aa26.5■■□□□ 1.83
VPS28-203ENST00000524521 CSF1RP07333 972 aa26.5■■□□□ 1.83
VPS28-203ENST00000524521 CIAPIN1Q6FI81 312 aa26.5■■□□□ 1.83
VPS28-203ENST00000524521 ZC3H12CQ9C0D7 883 aaKnown RBP26.5■■□□□ 1.83
VPS28-203ENST00000524521 C9orf78Q9NZ63 289 aaPredicted RBP26.5■■□□□ 1.83
VPS28-203ENST00000524521 GGA1Q9UJY5 639 aa26.5■■□□□ 1.83
VPS28-203ENST00000524521 CLEC11AQ9Y240 323 aa26.5■■□□□ 1.83
VPS28-203ENST00000524521 GRM8O00222 908 aa26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms