RNA–Protein interactions for RNA: ENST00000520062.1

HMGB1P46-201, Transcript of high mobility group box 1 pseudogene 46, humanhuman

BASIC

Gene HMGB1P46, Length 610 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P46-201ENST00000520062 SHROOM4Q9ULL8 1493 aa8.37□□□□□ -1.07
HMGB1P46-201ENST00000520062 LOC105371045A0A1W2PR82 267 aa8.36□□□□□ -1.07
HMGB1P46-201ENST00000520062 FAM157BP0CG42 384 aa8.36□□□□□ -1.07
HMGB1P46-201ENST00000520062 C9orf131Q5VYM1 1079 aa8.36□□□□□ -1.07
HMGB1P46-201ENST00000520062 FIGNL1Q6PIW4 674 aa8.36□□□□□ -1.07
HMGB1P46-201ENST00000520062 EPS8L3Q8TE67 593 aaKnown RBP8.36□□□□□ -1.07
HMGB1P46-201ENST00000520062 ZFP42Q96MM3 310 aa8.36□□□□□ -1.07
HMGB1P46-201ENST00000520062 CHRDQ9H2X0 955 aa8.36□□□□□ -1.07
HMGB1P46-201ENST00000520062 FAM8A1Q9UBU6 413 aa8.36□□□□□ -1.07
HMGB1P46-201ENST00000520062 DNMT3LQ9UJW3 386 aa8.36□□□□□ -1.07
HMGB1P46-201ENST00000520062 VEGFBP49765 207 aa8.35□□□□□ -1.07
HMGB1P46-201ENST00000520062 OSBPL7Q9BZF2 842 aa8.35□□□□□ -1.07
HMGB1P46-201ENST00000520062 USP31Q70CQ4 1352 aa8.35□□□□□ -1.07
HMGB1P46-201ENST00000520062 POTECB2RU33 542 aa8.34□□□□□ -1.07
HMGB1P46-201ENST00000520062 IRS1P35568 1242 aa8.34□□□□□ -1.07
HMGB1P46-201ENST00000520062 ST13P50502 369 aaKnown RBP8.34□□□□□ -1.07
HMGB1P46-201ENST00000520062 PTPN12Q05209 780 aaKnown RBP8.34□□□□□ -1.07
HMGB1P46-201ENST00000520062 LAMC2Q13753 1193 aa8.34□□□□□ -1.07
HMGB1P46-201ENST00000520062 TTC39BQ5VTQ0 682 aaPredicted RBP8.34□□□□□ -1.07
HMGB1P46-201ENST00000520062 CCSER2Q9H7U1 834 aa8.34□□□□□ -1.07
HMGB1P46-201ENST00000520062 NPHS2Q9NP85 383 aa8.34□□□□□ -1.07
HMGB1P46-201ENST00000520062 KCNH4Q9UQ05 1017 aa8.34□□□□□ -1.07
HMGB1P46-201ENST00000520062 AXIN1O15169 862 aa8.33□□□□□ -1.08
HMGB1P46-201ENST00000520062 EFSO43281 561 aa8.33□□□□□ -1.08
HMGB1P46-201ENST00000520062 PI16Q6UXB8 463 aa8.33□□□□□ -1.08
HMGB1P46-201ENST00000520062 C1orf127Q8N9H9 656 aa8.33□□□□□ -1.08
HMGB1P46-201ENST00000520062 SLC43A3Q8NBI5 491 aa8.33□□□□□ -1.08
HMGB1P46-201ENST00000520062 GAS2L1Q99501 681 aaPredicted RBP8.33□□□□□ -1.08
HMGB1P46-201ENST00000520062 ZCCHC2Q9C0B9 1178 aaKnown RBP8.33□□□□□ -1.08
HMGB1P46-201ENST00000520062 SUV39H2Q9H5I1 410 aa8.33□□□□□ -1.08
HMGB1P46-201ENST00000520062 EFCC1Q9HA90 598 aa8.33□□□□□ -1.08
HMGB1P46-201ENST00000520062 CNTN3Q9P232 1028 aa8.33□□□□□ -1.08
HMGB1P46-201ENST00000520062 SENP3-EIF4A1A0A087X0R7 540 aa8.32□□□□□ -1.08
HMGB1P46-201ENST00000520062 EREGO14944 169 aa8.32□□□□□ -1.08
HMGB1P46-201ENST00000520062 CES1P23141 567 aa8.32□□□□□ -1.08
HMGB1P46-201ENST00000520062 TAF1CQ15572 869 aaPredicted RBP8.32□□□□□ -1.08
HMGB1P46-201ENST00000520062 PKDCCQ504Y2 493 aa8.32□□□□□ -1.08
HMGB1P46-201ENST00000520062 UBXN4Q92575 508 aa8.32□□□□□ -1.08
HMGB1P46-201ENST00000520062 TINF2Q9BSI4 451 aa8.32□□□□□ -1.08
HMGB1P46-201ENST00000520062 PCDHGC4Q9Y5F7 938 aa8.32□□□□□ -1.08
HMGB1P46-201ENST00000520062 NRG2O14511 850 aaPredicted RBP8.31□□□□□ -1.08
HMGB1P46-201ENST00000520062 ATXN7O15265 892 aaPredicted RBP8.31□□□□□ -1.08
HMGB1P46-201ENST00000520062 USP17L7P0C7H9 530 aa8.31□□□□□ -1.08
HMGB1P46-201ENST00000520062 EDN3P14138 238 aa8.31□□□□□ -1.08
HMGB1P46-201ENST00000520062 CCINQ13939 588 aa8.31□□□□□ -1.08
HMGB1P46-201ENST00000520062 KIAA0319Q5VV43 1072 aa8.31□□□□□ -1.08
HMGB1P46-201ENST00000520062 HS2ST1Q7LGA3 356 aa8.31□□□□□ -1.08
HMGB1P46-201ENST00000520062 BCO2Q9BYV7 579 aa8.31□□□□□ -1.08
HMGB1P46-201ENST00000520062 TRAK1Q9UPV9 953 aa8.31□□□□□ -1.08
HMGB1P46-201ENST00000520062 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.31□□□□□ -1.08
HMGB1P46-201ENST00000520062 H7C1W4 665 aa8.3□□□□□ -1.08
HMGB1P46-201ENST00000520062 MAN1A2O60476 641 aa8.3□□□□□ -1.08
HMGB1P46-201ENST00000520062 GADD45BO75293 160 aaPredicted RBP8.3□□□□□ -1.08
HMGB1P46-201ENST00000520062 POLR3DP05423 398 aaPredicted RBP8.3□□□□□ -1.08
HMGB1P46-201ENST00000520062 GNL2Q13823 731 aaKnown RBP8.3□□□□□ -1.08
HMGB1P46-201ENST00000520062 NXPE4Q6UWF7 544 aa8.3□□□□□ -1.08
HMGB1P46-201ENST00000520062 ZNF654Q8IZM8 581 aa8.3□□□□□ -1.08
HMGB1P46-201ENST00000520062 OR13H1Q8NG92 308 aa8.3□□□□□ -1.08
HMGB1P46-201ENST00000520062 GSX2Q9BZM3 304 aa8.3□□□□□ -1.08
HMGB1P46-201ENST00000520062 DDX41Q9UJV9 622 aaKnown RBP8.3□□□□□ -1.08
HMGB1P46-201ENST00000520062 GSTT1P30711 240 aa8.29□□□□□ -1.08
HMGB1P46-201ENST00000520062 UBAP2LQ14157 1087 aaKnown RBP8.29□□□□□ -1.08
HMGB1P46-201ENST00000520062 GRM2Q14416 872 aa8.29□□□□□ -1.08
HMGB1P46-201ENST00000520062 GMCL1Q96IK5 515 aa8.29□□□□□ -1.08
HMGB1P46-201ENST00000520062 NUCKS1Q9H1E3 243 aaKnown RBP8.29□□□□□ -1.08
HMGB1P46-201ENST00000520062 PPP4R2Q9NY27 417 aa8.29□□□□□ -1.08
HMGB1P46-201ENST00000520062 SLC35F4A4IF30 521 aa8.28□□□□□ -1.08
HMGB1P46-201ENST00000520062 PHF20L1A8MW92 1017 aa8.28□□□□□ -1.08
HMGB1P46-201ENST00000520062 SASH3O75995 380 aa8.28□□□□□ -1.08
HMGB1P46-201ENST00000520062 THBS1P07996 1170 aa8.28□□□□□ -1.08
HMGB1P46-201ENST00000520062 HOXD8P13378 290 aaPredicted RBP8.28□□□□□ -1.08
HMGB1P46-201ENST00000520062 SOX18P35713 384 aa8.28□□□□□ -1.08
HMGB1P46-201ENST00000520062 TNP2Q05952 138 aa8.28□□□□□ -1.08
HMGB1P46-201ENST00000520062 SFSWAPQ12872 951 aaKnown RBP8.28□□□□□ -1.08
HMGB1P46-201ENST00000520062 PRPF40BQ6NWY9 871 aaKnown RBP8.28□□□□□ -1.08
HMGB1P46-201ENST00000520062 ANKRD24Q8TF21 1146 aa8.28□□□□□ -1.08
HMGB1P46-201ENST00000520062 ATP13A2Q9NQ11 1180 aa8.28□□□□□ -1.08
HMGB1P46-201ENST00000520062 KHNYNO15037 678 aaKnown RBP8.27□□□□□ -1.09
HMGB1P46-201ENST00000520062 MAP3K6O95382 1288 aa8.27□□□□□ -1.09
HMGB1P46-201ENST00000520062 PTSQ03393 145 aa8.27□□□□□ -1.09
HMGB1P46-201ENST00000520062 MEI1Q5TIA1 1274 aa8.27□□□□□ -1.09
HMGB1P46-201ENST00000520062 RIPOR1Q6ZS17 1223 aa8.27□□□□□ -1.09
HMGB1P46-201ENST00000520062 USP48Q86UV5 1035 aa8.27□□□□□ -1.09
HMGB1P46-201ENST00000520062 NOC4LQ9BVI4 516 aaKnown RBP8.27□□□□□ -1.09
HMGB1P46-201ENST00000520062 ACBD3Q9H3P7 528 aa8.27□□□□□ -1.09
HMGB1P46-201ENST00000520062 CAPN10Q9HC96 672 aa8.27□□□□□ -1.09
HMGB1P46-201ENST00000520062 GGT7Q9UJ14 662 aa8.27□□□□□ -1.09
HMGB1P46-201ENST00000520062 SALL4Q9UJQ4 1053 aa8.27□□□□□ -1.09
HMGB1P46-201ENST00000520062 A0A1W2PP55 124 aa8.26□□□□□ -1.09
HMGB1P46-201ENST00000520062 MMP20O60882 483 aa8.26□□□□□ -1.09
HMGB1P46-201ENST00000520062 RARAP10276 462 aa8.26□□□□□ -1.09
HMGB1P46-201ENST00000520062 MAPTP10636 758 aaKnown RBP8.26□□□□□ -1.09
HMGB1P46-201ENST00000520062 XRCC5P13010 732 aaKnown RBP8.26□□□□□ -1.09
HMGB1P46-201ENST00000520062 ERMP1Q7Z2K6 904 aa8.26□□□□□ -1.09
HMGB1P46-201ENST00000520062 TRIM22Q8IYM9 498 aa8.26□□□□□ -1.09
HMGB1P46-201ENST00000520062 GLIS3Q8NEA6 775 aa8.26□□□□□ -1.09
HMGB1P46-201ENST00000520062 GMLQ99445 158 aa8.26□□□□□ -1.09
HMGB1P46-201ENST00000520062 EHD4Q9H223 541 aa8.26□□□□□ -1.09
HMGB1P46-201ENST00000520062 SRA1Q9HD15 236 aaKnown RBP8.26□□□□□ -1.09
HMGB1P46-201ENST00000520062 NDFIP2Q9NV92 336 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms