RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 SNRKQ9NRH2 765 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 FPGT-TNNI3KV9GXZ4 949 aa10.2□□□□□ -0.78
RNF4-220ENST00000513578 CASZ1Q86V15 1759 aa10.19□□□□□ -0.78
RNF4-220ENST00000513578 LRP5O75197 1615 aa10.19□□□□□ -0.78
RNF4-220ENST00000513578 CAMTA2O94983 1202 aa10.19□□□□□ -0.78
RNF4-220ENST00000513578 HSP90B1P14625 803 aaKnown RBP10.19□□□□□ -0.78
RNF4-220ENST00000513578 RXRBP28702 533 aa10.19□□□□□ -0.78
RNF4-220ENST00000513578 TSHZ3Q63HK5 1081 aa10.19□□□□□ -0.78
RNF4-220ENST00000513578 KLHDC4Q8TBB5 520 aa10.19□□□□□ -0.78
RNF4-220ENST00000513578 RILPL2Q969X0 211 aa10.19□□□□□ -0.78
RNF4-220ENST00000513578 SIL1Q9H173 461 aa10.19□□□□□ -0.78
RNF4-220ENST00000513578 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.19□□□□□ -0.78
RNF4-220ENST00000513578 BRWD3Q6RI45 1802 aa10.19□□□□□ -0.78
RNF4-220ENST00000513578 COL24A1Q17RW2 1714 aa10.19□□□□□ -0.78
RNF4-220ENST00000513578 ARAP2Q8WZ64 1704 aa10.19□□□□□ -0.78
RNF4-220ENST00000513578 RTL9Q8NET4 1388 aa10.18□□□□□ -0.78
RNF4-220ENST00000513578 SGSM2O43147 1006 aa10.18□□□□□ -0.78
RNF4-220ENST00000513578 PDE8AO60658 829 aa10.18□□□□□ -0.78
RNF4-220ENST00000513578 TFCP2Q12800 502 aa10.18□□□□□ -0.78
RNF4-220ENST00000513578 CCDC57Q2TAC2 916 aa10.18□□□□□ -0.78
RNF4-220ENST00000513578 TTLL11Q8NHH1 800 aa10.18□□□□□ -0.78
RNF4-220ENST00000513578 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.18□□□□□ -0.78
RNF4-220ENST00000513578 RUFY2Q8WXA3 655 aa10.18□□□□□ -0.78
RNF4-220ENST00000513578 TBC1D2BQ9UPU7 963 aa10.18□□□□□ -0.78
RNF4-220ENST00000513578 ZNF330Q9Y3S2 320 aaPredicted RBP10.18□□□□□ -0.78
RNF4-220ENST00000513578 ZNF609O15014 1411 aa10.17□□□□□ -0.78
RNF4-220ENST00000513578 UBN2Q6ZU65 1347 aa10.17□□□□□ -0.78
RNF4-220ENST00000513578 RAD50Q92878 1312 aa10.17□□□□□ -0.78
RNF4-220ENST00000513578 IRS4O14654 1257 aaPredicted RBP10.17□□□□□ -0.78
RNF4-220ENST00000513578 MCCP23508 829 aa10.17□□□□□ -0.78
RNF4-220ENST00000513578 CTSWP56202 376 aa10.17□□□□□ -0.78
RNF4-220ENST00000513578 HSCBQ8IWL3 235 aa10.17□□□□□ -0.78
RNF4-220ENST00000513578 LINC00116Q8NCU8 138 aa10.17□□□□□ -0.78
RNF4-220ENST00000513578 FAM89AQ96GI7 184 aa10.17□□□□□ -0.78
RNF4-220ENST00000513578 CCDC8Q9H0W5 538 aaPredicted RBP10.17□□□□□ -0.78
RNF4-220ENST00000513578 BCL11AQ9H165 835 aa10.17□□□□□ -0.78
RNF4-220ENST00000513578 TRMT112Q9UI30 125 aaKnown RBP10.17□□□□□ -0.78
RNF4-220ENST00000513578 DBNLQ9UJU6 430 aaKnown RBP10.17□□□□□ -0.78
RNF4-220ENST00000513578 ZNF652Q9Y2D9 606 aa10.17□□□□□ -0.78
RNF4-220ENST00000513578 C4BP0C0L5 1744 aa10.16□□□□□ -0.78
RNF4-220ENST00000513578 ABCC12Q96J65 1359 aa10.16□□□□□ -0.78
RNF4-220ENST00000513578 SH3TC1Q8TE82 1336 aa10.16□□□□□ -0.78
RNF4-220ENST00000513578 MYH7P12883 1935 aa10.16□□□□□ -0.78
RNF4-220ENST00000513578 RPS6KA4O75676 772 aa10.16□□□□□ -0.78
RNF4-220ENST00000513578 HMGB2P26583 209 aaKnown RBP10.16□□□□□ -0.78
RNF4-220ENST00000513578 SLC4A3P48751 1232 aa10.16□□□□□ -0.78
RNF4-220ENST00000513578 IFIT5Q13325 482 aaKnown RBP10.16□□□□□ -0.78
RNF4-220ENST00000513578 HAUS7Q99871 368 aa10.16□□□□□ -0.78
RNF4-220ENST00000513578 UTP14AQ9BVJ6 771 aaKnown RBP10.16□□□□□ -0.78
RNF4-220ENST00000513578 ANTXR1Q9H6X2 564 aa10.16□□□□□ -0.78
RNF4-220ENST00000513578 TLR7Q9NYK1 1049 aaKnown RBP10.16□□□□□ -0.78
RNF4-220ENST00000513578 AKAP2Q9Y2D5 859 aa10.16□□□□□ -0.78
RNF4-220ENST00000513578 CHMP3Q9Y3E7 222 aa10.16□□□□□ -0.78
RNF4-220ENST00000513578 C4AP0C0L4 1744 aa10.16□□□□□ -0.78
RNF4-220ENST00000513578 AKAP11Q9UKA4 1901 aa10.15□□□□□ -0.78
RNF4-220ENST00000513578 ANKRD18BA2A2Z9 1011 aa10.15□□□□□ -0.78
RNF4-220ENST00000513578 GPTP24298 496 aa10.15□□□□□ -0.78
RNF4-220ENST00000513578 HSPA4P34932 840 aa10.15□□□□□ -0.78
RNF4-220ENST00000513578 SUSD4Q5VX71 490 aa10.15□□□□□ -0.78
RNF4-220ENST00000513578 BCL11BQ9C0K0 894 aaPredicted RBP10.15□□□□□ -0.78
RNF4-220ENST00000513578 LSG1Q9H089 658 aaKnown RBP10.15□□□□□ -0.78
RNF4-220ENST00000513578 CEP126Q9P2H0 1117 aa10.15□□□□□ -0.78
RNF4-220ENST00000513578 RIPOR2Q9Y4F9 1068 aa10.15□□□□□ -0.78
RNF4-220ENST00000513578 A0A1B0GUL6 1792 aa10.15□□□□□ -0.78
RNF4-220ENST00000513578 UBR3Q6ZT12 1888 aa10.15□□□□□ -0.79
RNF4-220ENST00000513578 K7ELQ4 463 aaPredicted RBP10.14□□□□□ -0.79
RNF4-220ENST00000513578 NTSR2O95665 410 aa10.14□□□□□ -0.79
RNF4-220ENST00000513578 C1QBPQ07021 282 aaKnown RBP10.14□□□□□ -0.79
RNF4-220ENST00000513578 LRRC24Q50LG9 513 aa10.14□□□□□ -0.79
RNF4-220ENST00000513578 RTL5Q5HYW3 569 aaPredicted RBP10.14□□□□□ -0.79
RNF4-220ENST00000513578 SEPT12Q8IYM1 358 aa10.14□□□□□ -0.79
RNF4-220ENST00000513578 KCNB2Q92953 911 aa10.14□□□□□ -0.79
RNF4-220ENST00000513578 ZNF512BQ96KM6 892 aaPredicted RBP10.14□□□□□ -0.79
RNF4-220ENST00000513578 ARXQ96QS3 562 aa10.14□□□□□ -0.79
RNF4-220ENST00000513578 DBNDD2Q9BQY9 259 aa10.14□□□□□ -0.79
RNF4-220ENST00000513578 QTRT2Q9H974 415 aaKnown RBP10.14□□□□□ -0.79
RNF4-220ENST00000513578 DIAPH3Q9NSV4 1193 aa10.14□□□□□ -0.79
RNF4-220ENST00000513578 NARFQ9UHQ1 456 aa10.14□□□□□ -0.79
RNF4-220ENST00000513578 RIC1Q4ADV7 1423 aa10.14□□□□□ -0.79
RNF4-220ENST00000513578 A0A0G2JS52 829 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 A0A1B0GUL7 405 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 ST18O60284 1047 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 MAP4K4O95819 1239 aaPredicted RBP10.13□□□□□ -0.79
RNF4-220ENST00000513578 ITGA6P23229 1130 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 DDIT3P35638 169 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 MCM2P49736 904 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 MYT1Q01538 1121 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 SLC10A5Q5PT55 438 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 KIAA1211Q6ZU35 1233 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 ZNF594Q96JF6 807 aaPredicted RBP10.13□□□□□ -0.79
RNF4-220ENST00000513578 PUS3Q9BZE2 481 aaKnown RBP10.13□□□□□ -0.79
RNF4-220ENST00000513578 BOLA2Q9H3K6 86 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 GREM2Q9H772 168 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 ANO2Q9NQ90 1003 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 CIZ1Q9ULV3 898 aaPredicted RBP10.13□□□□□ -0.79
RNF4-220ENST00000513578 MED23Q9ULK4 1368 aa10.13□□□□□ -0.79
RNF4-220ENST00000513578 MROH5Q6ZUA9 1318 aa10.12□□□□□ -0.79
RNF4-220ENST00000513578 SF3B3Q15393 1217 aaKnown RBP10.12□□□□□ -0.79
RNF4-220ENST00000513578 TAF7LQ5H9L4 462 aa10.12□□□□□ -0.79
RNF4-220ENST00000513578 FAM196AQ6ZSG2 479 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms