RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PLA2G12BQ9BX93 195 aa18.76■□□□□ 0.59
NUP54-213ENST00000513352 CHMP4BQ9H444 224 aaKnown RBP18.76■□□□□ 0.59
NUP54-213ENST00000513352 BICC1Q9H694 974 aaKnown RBP18.76■□□□□ 0.59
NUP54-213ENST00000513352 KIAA1551Q9HCM1 1747 aa18.76■□□□□ 0.59
NUP54-213ENST00000513352 DLEC1Q9Y238 1755 aa18.76■□□□□ 0.59
NUP54-213ENST00000513352 ZBTB7BO15156 539 aaPredicted RBP18.75■□□□□ 0.59
NUP54-213ENST00000513352 GNAI2P04899 355 aa18.75■□□□□ 0.59
NUP54-213ENST00000513352 SRGNP10124 158 aa18.75■□□□□ 0.59
NUP54-213ENST00000513352 NPR1P16066 1061 aa18.75■□□□□ 0.59
NUP54-213ENST00000513352 EPHA10Q5JZY3 1008 aa18.75■□□□□ 0.59
NUP54-213ENST00000513352 LMBR1LQ6UX01 489 aa18.75■□□□□ 0.59
NUP54-213ENST00000513352 DDX46Q7L014 1031 aaKnown RBP18.75■□□□□ 0.59
NUP54-213ENST00000513352 MASTLQ96GX5 879 aa18.75■□□□□ 0.59
NUP54-213ENST00000513352 RBM17Q96I25 401 aaKnown RBP18.75■□□□□ 0.59
NUP54-213ENST00000513352 C1orf115Q9H7X2 142 aa18.75■□□□□ 0.59
NUP54-213ENST00000513352 FOXO4P98177 505 aa18.74■□□□□ 0.59
NUP54-213ENST00000513352 SF3B3Q15393 1217 aaKnown RBP18.74■□□□□ 0.59
NUP54-213ENST00000513352 CRY2Q49AN0 593 aa18.74■□□□□ 0.59
NUP54-213ENST00000513352 TAF1P21675 1872 aa18.73■□□□□ 0.59
NUP54-213ENST00000513352 KLRG2A4D1S0 409 aaPredicted RBP18.73■□□□□ 0.59
NUP54-213ENST00000513352 FAM161AQ3B820 660 aa18.73■□□□□ 0.59
NUP54-213ENST00000513352 STYK1Q6J9G0 422 aa18.73■□□□□ 0.59
NUP54-213ENST00000513352 PELP1Q8IZL8 1130 aaKnown RBP18.73■□□□□ 0.59
NUP54-213ENST00000513352 TTLL11Q8NHH1 800 aa18.73■□□□□ 0.59
NUP54-213ENST00000513352 GREM2Q9H772 168 aa18.73■□□□□ 0.59
NUP54-213ENST00000513352 SPEF2Q9C093 1822 aa18.72■□□□□ 0.59
NUP54-213ENST00000513352 TAF7LQ5H9L4 462 aa18.72■□□□□ 0.59
NUP54-213ENST00000513352 KAZALD1Q96I82 304 aa18.72■□□□□ 0.59
NUP54-213ENST00000513352 PIM2Q9P1W9 311 aa18.72■□□□□ 0.59
NUP54-213ENST00000513352 ITGA6P23229 1130 aa18.71■□□□□ 0.59
NUP54-213ENST00000513352 ANKRD44Q8N8A2 993 aa18.71■□□□□ 0.59
NUP54-213ENST00000513352 CNKSR1Q969H4 720 aa18.71■□□□□ 0.59
NUP54-213ENST00000513352 SEC31BQ9NQW1 1179 aa18.71■□□□□ 0.59
NUP54-213ENST00000513352 ZNF219Q9P2Y4 722 aaPredicted RBP18.71■□□□□ 0.59
NUP54-213ENST00000513352 BRCA1P38398 1863 aaKnown RBP18.71■□□□□ 0.59
NUP54-213ENST00000513352 ANKRD18BA2A2Z9 1011 aa18.7■□□□□ 0.58
NUP54-213ENST00000513352 CSF1RP07333 972 aa18.7■□□□□ 0.58
NUP54-213ENST00000513352 KCNA3P22001 575 aa18.7■□□□□ 0.58
NUP54-213ENST00000513352 ALDH1B1P30837 517 aa18.7■□□□□ 0.58
NUP54-213ENST00000513352 IFIT5Q13325 482 aaKnown RBP18.7■□□□□ 0.58
NUP54-213ENST00000513352 CCDC57Q2TAC2 916 aa18.7■□□□□ 0.58
NUP54-213ENST00000513352 TTLL6Q8N841 843 aa18.7■□□□□ 0.58
NUP54-213ENST00000513352 CRAMP1Q96RY5 1269 aa18.7■□□□□ 0.58
NUP54-213ENST00000513352 CDC5LQ99459 802 aaKnown RBP18.7■□□□□ 0.58
NUP54-213ENST00000513352 NEFLP07196 543 aa18.69■□□□□ 0.58
NUP54-213ENST00000513352 HOXA10P31260 410 aaPredicted RBP18.69■□□□□ 0.58
NUP54-213ENST00000513352 GRAPQ13588 217 aa18.69■□□□□ 0.58
NUP54-213ENST00000513352 DALRD3Q5D0E6 543 aaKnown RBP18.69■□□□□ 0.58
NUP54-213ENST00000513352 PRPF40BQ6NWY9 871 aaKnown RBP18.69■□□□□ 0.58
NUP54-213ENST00000513352 ANKRD18AQ8IVF6 992 aa18.69■□□□□ 0.58
NUP54-213ENST00000513352 EXOC6Q8TAG9 804 aa18.69■□□□□ 0.58
NUP54-213ENST00000513352 GRAPLQ8TC17 118 aaPredicted RBP18.69■□□□□ 0.58
NUP54-213ENST00000513352 ZBTB40Q9NUA8 1239 aa18.69■□□□□ 0.58
NUP54-213ENST00000513352 BCS1LQ9Y276 419 aa18.69■□□□□ 0.58
NUP54-213ENST00000513352 SLX4Q8IY92 1834 aa18.69■□□□□ 0.58
NUP54-213ENST00000513352 PPEF1O14829 653 aaPredicted RBP18.68■□□□□ 0.58
NUP54-213ENST00000513352 RABL6Q3YEC7 729 aaPredicted RBP18.68■□□□□ 0.58
NUP54-213ENST00000513352 SRCAPQ6ZRS2 3230 aa18.68■□□□□ 0.58
NUP54-213ENST00000513352 RTL9Q8NET4 1388 aa18.68■□□□□ 0.58
NUP54-213ENST00000513352 IGHMBP2P38935 993 aaKnown RBP18.67■□□□□ 0.58
NUP54-213ENST00000513352 CELF1Q92879 486 aaKnown RBP18.67■□□□□ 0.58
NUP54-213ENST00000513352 SRGAP3O43295 1099 aa18.66■□□□□ 0.58
NUP54-213ENST00000513352 MPHOSPH8Q99549 860 aa18.66■□□□□ 0.58
NUP54-213ENST00000513352 TMX4Q9H1E5 349 aaPredicted RBP18.66■□□□□ 0.58
NUP54-213ENST00000513352 COL4A1P02462 1669 aa18.66■□□□□ 0.58
NUP54-213ENST00000513352 RPS8P62241 208 aaKnown RBP18.65■□□□□ 0.58
NUP54-213ENST00000513352 CEP85Q6P2H3 762 aa18.65■□□□□ 0.58
NUP54-213ENST00000513352 ZNF594Q96JF6 807 aaPredicted RBP18.65■□□□□ 0.58
NUP54-213ENST00000513352 PNMA6EA0A0J9YXQ4 647 aa18.64■□□□□ 0.57
NUP54-213ENST00000513352 C21orf2O43822 256 aa18.64■□□□□ 0.57
NUP54-213ENST00000513352 BBOX1O75936 387 aa18.64■□□□□ 0.57
NUP54-213ENST00000513352 GPR162Q16538 588 aa18.64■□□□□ 0.57
NUP54-213ENST00000513352 ARFGEF1Q9Y6D6 1849 aa18.63■□□□□ 0.57
NUP54-213ENST00000513352 ATP8B2P98198 1209 aa18.63■□□□□ 0.57
NUP54-213ENST00000513352 KLHDC4Q8TBB5 520 aa18.63■□□□□ 0.57
NUP54-213ENST00000513352 SIL1Q9H173 461 aa18.63■□□□□ 0.57
NUP54-213ENST00000513352 CNNM1Q9NRU3 951 aa18.63■□□□□ 0.57
NUP54-213ENST00000513352 MTX1Q13505 466 aa18.62■□□□□ 0.57
NUP54-213ENST00000513352 OLFM4Q6UX06 510 aa18.62■□□□□ 0.57
NUP54-213ENST00000513352 LDHAL6AQ6ZMR3 332 aa18.62■□□□□ 0.57
NUP54-213ENST00000513352 TMC4Q7Z404 712 aa18.62■□□□□ 0.57
NUP54-213ENST00000513352 PA2G4Q9UQ80 394 aaKnown RBP18.62■□□□□ 0.57
NUP54-213ENST00000513352 HMMRO75330 724 aa18.61■□□□□ 0.57
NUP54-213ENST00000513352 SLC51AQ86UW1 340 aa18.61■□□□□ 0.57
NUP54-213ENST00000513352 RPAP2Q8IXW5 612 aaPredicted RBP18.61■□□□□ 0.57
NUP54-213ENST00000513352 ATP6V0A2Q9Y487 856 aa18.61■□□□□ 0.57
NUP54-213ENST00000513352 DCAF8L1A6NGE4 600 aa18.6■□□□□ 0.57
NUP54-213ENST00000513352 YBX3P16989 372 aaKnown RBP eCLIP18.6■□□□□ 0.57
NUP54-213ENST00000513352 RFX5P48382 616 aaPredicted RBP18.6■□□□□ 0.57
NUP54-213ENST00000513352 CCDC93Q567U6 631 aa18.6■□□□□ 0.57
NUP54-213ENST00000513352 BSDC1Q9NW68 430 aaPredicted RBP18.6■□□□□ 0.57
NUP54-213ENST00000513352 PTPN12Q05209 780 aaKnown RBP18.59■□□□□ 0.57
NUP54-213ENST00000513352 OS9Q13438 667 aaPredicted RBP18.59■□□□□ 0.57
NUP54-213ENST00000513352 AAMPQ13685 434 aa18.59■□□□□ 0.57
NUP54-213ENST00000513352 SOGA3Q5TF21 947 aa18.59■□□□□ 0.57
NUP54-213ENST00000513352 SP8Q8IXZ3 490 aa18.59■□□□□ 0.57
NUP54-213ENST00000513352 PUS3Q9BZE2 481 aaKnown RBP18.59■□□□□ 0.57
NUP54-213ENST00000513352 LRRC37AA6NMS7 1700 aa18.59■□□□□ 0.57
NUP54-213ENST00000513352 POLA2Q14181 598 aa18.58■□□□□ 0.56
NUP54-213ENST00000513352 LRRC24Q50LG9 513 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms