RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CELF1Q92879 486 aaKnown RBP18.21■□□□□ 0.51
UPF3A-204ENST00000475218 SPINK5Q9NQ38 1064 aaPredicted RBP18.21■□□□□ 0.51
UPF3A-204ENST00000475218 IRS4O14654 1257 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-204ENST00000475218 CHADLQ6NUI6 762 aa18.2■□□□□ 0.5
UPF3A-204ENST00000475218 ZBTB38Q8NAP3 1195 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-204ENST00000475218 METTL22Q9BUU2 404 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-204ENST00000475218 SALL2Q9Y467 1007 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-204ENST00000475218 IQCA1LA6NCM1 817 aa18.19■□□□□ 0.5
UPF3A-204ENST00000475218 IGKV5-2P06315 115 aa18.19■□□□□ 0.5
UPF3A-204ENST00000475218 JDP2Q8WYK2 163 aa18.19■□□□□ 0.5
UPF3A-204ENST00000475218 JARID2Q92833 1246 aaPredicted RBP18.19■□□□□ 0.5
UPF3A-204ENST00000475218 CCDC191Q8NCU4 936 aa18.19■□□□□ 0.5
UPF3A-204ENST00000475218 MAP3K2Q9Y2U5 619 aa18.19■□□□□ 0.5
UPF3A-204ENST00000475218 PI4KAP2A4QPH2 592 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 PPIP5K2O43314 1243 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 SCNN1DP51172 638 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 WDR63Q8IWG1 891 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 PI4KAP1Q8N8J0 262 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 KLRG1Q96E93 195 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 HACL1Q9UJ83 578 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 PCCAP05165 728 aaPredicted RBP18.17■□□□□ 0.5
UPF3A-204ENST00000475218 EPHX2P34913 555 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 DPP8Q6V1X1 898 aaPredicted RBP18.17■□□□□ 0.5
UPF3A-204ENST00000475218 MPNDQ8N594 471 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 KSR2Q6VAB6 950 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 LDHDQ86WU2 507 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 VPS33BQ9H267 617 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 GJA3Q9Y6H8 435 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 ITGBL1O95965 494 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-204ENST00000475218 EIF6P56537 245 aaKnown RBP18.16■□□□□ 0.5
UPF3A-204ENST00000475218 KIAA2012Q0VF49 1180 aa18.16■□□□□ 0.5
UPF3A-204ENST00000475218 NIM1KQ8IY84 436 aa18.16■□□□□ 0.5
UPF3A-204ENST00000475218 JMYQ8N9B5 988 aa18.16■□□□□ 0.5
UPF3A-204ENST00000475218 SEC31BQ9NQW1 1179 aa18.16■□□□□ 0.5
UPF3A-204ENST00000475218 CWC25Q9NXE8 425 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-204ENST00000475218 PASKQ96RG2 1323 aa18.16■□□□□ 0.5
UPF3A-204ENST00000475218 VAMP4O75379 141 aa18.15■□□□□ 0.5
UPF3A-204ENST00000475218 DDX58O95786 925 aaKnown RBP18.15■□□□□ 0.5
UPF3A-204ENST00000475218 SLC4A2P04920 1241 aa18.15■□□□□ 0.5
UPF3A-204ENST00000475218 CXCL9Q07325 125 aa18.15■□□□□ 0.5
UPF3A-204ENST00000475218 FAM9BQ8IZU0 186 aa18.15■□□□□ 0.5
UPF3A-204ENST00000475218 YDJCA8MPS7 323 aa18.14■□□□□ 0.5
UPF3A-204ENST00000475218 EPS15P42566 896 aa18.14■□□□□ 0.5
UPF3A-204ENST00000475218 EXOSC9Q06265 439 aaKnown RBP18.14■□□□□ 0.5
UPF3A-204ENST00000475218 CWF19L2Q2TBE0 894 aaKnown RBP18.14■□□□□ 0.5
UPF3A-204ENST00000475218 EAPPQ56P03 285 aaPredicted RBP18.14■□□□□ 0.5
UPF3A-204ENST00000475218 TMC4Q7Z404 712 aa18.14■□□□□ 0.5
UPF3A-204ENST00000475218 SUPT20HQ8NEM7 779 aa18.14■□□□□ 0.5
UPF3A-204ENST00000475218 GPSM2P81274 684 aa18.14■□□□□ 0.49
UPF3A-204ENST00000475218 STK31Q9BXU1 1019 aa18.14■□□□□ 0.49
UPF3A-204ENST00000475218 CHMP4AQ9BY43 222 aa18.14■□□□□ 0.49
UPF3A-204ENST00000475218 POLLQ9UGP5 575 aa18.14■□□□□ 0.49
UPF3A-204ENST00000475218 ZNRF3Q9ULT6 936 aa18.14■□□□□ 0.49
UPF3A-204ENST00000475218 ZNF521Q96K83 1311 aa18.13■□□□□ 0.49
UPF3A-204ENST00000475218 TMX4Q9H1E5 349 aaPredicted RBP18.13■□□□□ 0.49
UPF3A-204ENST00000475218 CACNA1FO60840 1977 aa18.13■□□□□ 0.49
UPF3A-204ENST00000475218 CDHR2Q9BYE9 1310 aa18.12■□□□□ 0.49
UPF3A-204ENST00000475218 NEURL1BA8MQ27 555 aa18.12■□□□□ 0.49
UPF3A-204ENST00000475218 PDE8AO60658 829 aa18.12■□□□□ 0.49
UPF3A-204ENST00000475218 RPS8P62241 208 aaKnown RBP18.12■□□□□ 0.49
UPF3A-204ENST00000475218 FLIIQ13045 1269 aa18.12■□□□□ 0.49
UPF3A-204ENST00000475218 MAP1SQ66K74 1059 aaPredicted RBP18.12■□□□□ 0.49
UPF3A-204ENST00000475218 GPR101Q96P66 508 aaPredicted RBP18.12■□□□□ 0.49
UPF3A-204ENST00000475218 CCDC85AQ96PX6 553 aaPredicted RBP18.12■□□□□ 0.49
UPF3A-204ENST00000475218 NSFL1CQ9UNZ2 370 aaKnown RBP18.11■□□□□ 0.49
UPF3A-204ENST00000475218 MYH3P11055 1940 aa18.11■□□□□ 0.49
UPF3A-204ENST00000475218 RAD17O75943 681 aa18.1■□□□□ 0.49
UPF3A-204ENST00000475218 PNMA8AQ86V59 439 aaPredicted RBP18.1■□□□□ 0.49
UPF3A-204ENST00000475218 GPRC5DQ9NZD1 345 aa18.1■□□□□ 0.49
UPF3A-204ENST00000475218 H7C1W4 665 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 GMPSP49915 693 aaPredicted RBP18.09■□□□□ 0.49
UPF3A-204ENST00000475218 CASP7P55210 303 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 TBC1D16Q8TBP0 767 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 CREBZFQ9NS37 354 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 SCN9AQ15858 1988 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 CTSWP56202 376 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 CCDC152Q4G0S7 254 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 TTLL11Q8NHH1 800 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 CLEC11AQ9Y240 323 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 SPEF2Q9C093 1822 aa18.08■□□□□ 0.49
UPF3A-204ENST00000475218 SHTN1A0MZ66 631 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 WASHC4Q2M389 1173 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 CIAPIN1Q6FI81 312 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 CNTROBQ8N137 903 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 KCNQ5Q9NR82 932 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 PODXL2Q9NZ53 605 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 FMR1Q06787 632 aaKnown RBP eCLIP18.07■□□□□ 0.48
UPF3A-204ENST00000475218 GCKRQ14397 625 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 WTIPA6NIX2 430 aaPredicted RBP18.07■□□□□ 0.48
UPF3A-204ENST00000475218 C6orf229H3BNL8 230 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 RIMBP2O15034 1052 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 HSP90B1P14625 803 aaKnown RBP18.07■□□□□ 0.48
UPF3A-204ENST00000475218 LMOD1P29536 600 aaPredicted RBP18.07■□□□□ 0.48
UPF3A-204ENST00000475218 NEXNQ0ZGT2 675 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 FKBP5Q13451 457 aaPredicted RBP18.07■□□□□ 0.48
UPF3A-204ENST00000475218 UBE3BQ7Z3V4 1068 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 DNAAF4Q8WXU2 420 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 GREM2Q9H772 168 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 DBNDD1Q9H9R9 158 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 RTL9Q8NET4 1388 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms