RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 BBOX1O75936 387 aa23.01■■□□□ 1.27
UPF3A-203ENST00000474056 PCCAP05165 728 aaPredicted RBP23.01■■□□□ 1.27
UPF3A-203ENST00000474056 IGKV5-2P06315 115 aa23.01■■□□□ 1.27
UPF3A-203ENST00000474056 FLIIQ13045 1269 aa23.01■■□□□ 1.27
UPF3A-203ENST00000474056 GRIPAP1Q4V328 841 aa23.01■■□□□ 1.27
UPF3A-203ENST00000474056 MYH16Q9H6N6 1097 aa23.01■■□□□ 1.27
UPF3A-203ENST00000474056 JARID2Q92833 1246 aaPredicted RBP23■■□□□ 1.27
UPF3A-203ENST00000474056 DUOX1Q9NRD9 1551 aa22.99■■□□□ 1.27
UPF3A-203ENST00000474056 FZD9O00144 591 aa22.99■■□□□ 1.27
UPF3A-203ENST00000474056 SP8Q8IXZ3 490 aa22.99■■□□□ 1.27
UPF3A-203ENST00000474056 CELF1Q92879 486 aaKnown RBP22.99■■□□□ 1.27
UPF3A-203ENST00000474056 TMX4Q9H1E5 349 aaPredicted RBP22.99■■□□□ 1.27
UPF3A-203ENST00000474056 SPEF2Q9C093 1822 aa22.98■■□□□ 1.27
UPF3A-203ENST00000474056 NEXNQ0ZGT2 675 aa22.97■■□□□ 1.27
UPF3A-203ENST00000474056 FKBP5Q13451 457 aaPredicted RBP22.97■■□□□ 1.27
UPF3A-203ENST00000474056 CWF19L2Q2TBE0 894 aaKnown RBP22.97■■□□□ 1.27
UPF3A-203ENST00000474056 JDP2Q8WYK2 163 aa22.97■■□□□ 1.27
UPF3A-203ENST00000474056 LTBP1Q14766 1721 aa22.96■■□□□ 1.27
UPF3A-203ENST00000474056 CCER2I3L3R5 266 aa22.96■■□□□ 1.27
UPF3A-203ENST00000474056 FSTL1Q12841 308 aa22.96■■□□□ 1.27
UPF3A-203ENST00000474056 LARGE2Q8N3Y3 721 aa22.96■■□□□ 1.27
UPF3A-203ENST00000474056 NEURL1BA8MQ27 555 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 PPIP5K2O43314 1243 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 PDE8AO60658 829 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 AOC3Q16853 763 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 DPP8Q6V1X1 898 aaPredicted RBP22.95■■□□□ 1.26
UPF3A-203ENST00000474056 TMC4Q7Z404 712 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 MPNDQ8N594 471 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 SMC1BQ8NDV3 1235 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 L3MBTL3Q96JM7 780 aaPredicted RBP22.95■■□□□ 1.26
UPF3A-203ENST00000474056 RTFDC1Q9BY42 306 aaPredicted RBP22.95■■□□□ 1.26
UPF3A-203ENST00000474056 CDHR2Q9BYE9 1310 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 HSP90B1P14625 803 aaKnown RBP22.94■■□□□ 1.26
UPF3A-203ENST00000474056 DNAAF4Q8WXU2 420 aa22.94■■□□□ 1.26
UPF3A-203ENST00000474056 SEC31BQ9NQW1 1179 aa22.94■■□□□ 1.26
UPF3A-203ENST00000474056 CEP350Q5VT06 3117 aa22.93■■□□□ 1.26
UPF3A-203ENST00000474056 SUPT20HQ8NEM7 779 aa22.93■■□□□ 1.26
UPF3A-203ENST00000474056 CCDC85AQ96PX6 553 aaPredicted RBP22.93■■□□□ 1.26
UPF3A-203ENST00000474056 EIF6P56537 245 aaKnown RBP22.92■■□□□ 1.26
UPF3A-203ENST00000474056 NIM1KQ8IY84 436 aa22.92■■□□□ 1.26
UPF3A-203ENST00000474056 POTEIP0CG38 1075 aa22.91■■□□□ 1.26
UPF3A-203ENST00000474056 POTEJP0CG39 1038 aa22.91■■□□□ 1.26
UPF3A-203ENST00000474056 APLP1P51693 650 aa22.91■■□□□ 1.26
UPF3A-203ENST00000474056 CCDC152Q4G0S7 254 aa22.91■■□□□ 1.26
UPF3A-203ENST00000474056 VPS33BQ9H267 617 aa22.91■■□□□ 1.26
UPF3A-203ENST00000474056 IQCA1LA6NCM1 817 aa22.9■■□□□ 1.26
UPF3A-203ENST00000474056 RPS8P62241 208 aaKnown RBP22.9■■□□□ 1.26
UPF3A-203ENST00000474056 GPC2Q8N158 579 aa22.9■■□□□ 1.26
UPF3A-203ENST00000474056 ADAMTSL1Q8N6G6 1762 aa22.9■■□□□ 1.26
UPF3A-203ENST00000474056 F6X3S4 739 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 CTSWP56202 376 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 KIAA2012Q0VF49 1180 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 GCKRQ14397 625 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 UBE3BQ7Z3V4 1068 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 TAF1DQ9H5J8 278 aaPredicted RBP22.89■■□□□ 1.25
UPF3A-203ENST00000474056 GJA3Q9Y6H8 435 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 E9PSI1 815 aa22.88■■□□□ 1.25
UPF3A-203ENST00000474056 H7C1W4 665 aa22.88■■□□□ 1.25
UPF3A-203ENST00000474056 GPSM2P81274 684 aa22.88■■□□□ 1.25
UPF3A-203ENST00000474056 LINS1Q8NG48 757 aa22.88■■□□□ 1.25
UPF3A-203ENST00000474056 HACL1Q9UJ83 578 aa22.88■■□□□ 1.25
UPF3A-203ENST00000474056 NSFL1CQ9UNZ2 370 aaKnown RBP22.88■■□□□ 1.25
UPF3A-203ENST00000474056 SLFN5Q08AF3 891 aa22.87■■□□□ 1.25
UPF3A-203ENST00000474056 TTLL11Q8NHH1 800 aa22.87■■□□□ 1.25
UPF3A-203ENST00000474056 CASP7P55210 303 aa22.86■■□□□ 1.25
UPF3A-203ENST00000474056 HTRA3P83110 453 aa22.86■■□□□ 1.25
UPF3A-203ENST00000474056 POLLQ9UGP5 575 aa22.86■■□□□ 1.25
UPF3A-203ENST00000474056 EPHX2P34913 555 aa22.85■■□□□ 1.25
UPF3A-203ENST00000474056 BEND3Q5T5X7 828 aa22.85■■□□□ 1.25
UPF3A-203ENST00000474056 CDCA7LQ96GN5 454 aa22.85■■□□□ 1.25
UPF3A-203ENST00000474056 ZNRF3Q9ULT6 936 aa22.85■■□□□ 1.25
UPF3A-203ENST00000474056 SCN9AQ15858 1988 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 SCNN1DP51172 638 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 EAPPQ56P03 285 aaPredicted RBP22.84■■□□□ 1.25
UPF3A-203ENST00000474056 CHADLQ6NUI6 762 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 ANKRD18AQ8IVF6 992 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 GPR101Q96P66 508 aaPredicted RBP22.84■■□□□ 1.25
UPF3A-203ENST00000474056 PLA2G12BQ9BX93 195 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 GREM2Q9H772 168 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 YDJCA8MPS7 323 aa22.83■■□□□ 1.25
UPF3A-203ENST00000474056 C6orf229H3BNL8 230 aa22.83■■□□□ 1.25
UPF3A-203ENST00000474056 CXCL9Q07325 125 aa22.83■■□□□ 1.25
UPF3A-203ENST00000474056 WASHC4Q2M389 1173 aa22.83■■□□□ 1.25
UPF3A-203ENST00000474056 RTL9Q8NET4 1388 aa22.82■■□□□ 1.24
UPF3A-203ENST00000474056 RIMBP2O15034 1052 aa22.82■■□□□ 1.24
UPF3A-203ENST00000474056 LDHDQ86WU2 507 aa22.82■■□□□ 1.24
UPF3A-203ENST00000474056 TBC1D16Q8TBP0 767 aa22.82■■□□□ 1.24
UPF3A-203ENST00000474056 CDC5LQ99459 802 aaKnown RBP22.82■■□□□ 1.24
UPF3A-203ENST00000474056 PODXL2Q9NZ53 605 aa22.82■■□□□ 1.24
UPF3A-203ENST00000474056 LMOD1P29536 600 aaPredicted RBP22.81■■□□□ 1.24
UPF3A-203ENST00000474056 DIEXFQ68CQ4 756 aaKnown RBP22.81■■□□□ 1.24
UPF3A-203ENST00000474056 MRPL50Q8N5N7 158 aaKnown RBP22.81■■□□□ 1.24
UPF3A-203ENST00000474056 PSME4Q14997 1843 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 RAD17O75943 681 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 EPS15P42566 896 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 CIAPIN1Q6FI81 312 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 EYA3Q99504 573 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 DBNDD1Q9H9R9 158 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 ANKIB1Q9P2G1 1089 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 A0A1B0GUL6 1792 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms