RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 GJB4Q9NTQ9 266 aa12.53□□□□□ -0.4
CHD3-208ENST00000470531 MTMR6Q9Y217 621 aa12.53□□□□□ -0.4
CHD3-208ENST00000470531 PIK3R4Q99570 1358 aa12.53□□□□□ -0.4
CHD3-208ENST00000470531 RAD50Q92878 1312 aa12.53□□□□□ -0.4
CHD3-208ENST00000470531 EVA1CP58658 441 aa12.52□□□□□ -0.4
CHD3-208ENST00000470531 TRIM29Q14134 588 aa12.52□□□□□ -0.4
CHD3-208ENST00000470531 CCDC171Q6TFL3 1326 aa12.52□□□□□ -0.4
CHD3-208ENST00000470531 SLC27A2O14975 620 aa12.52□□□□□ -0.41
CHD3-208ENST00000470531 IFIT1P09914 478 aaKnown RBP12.52□□□□□ -0.41
CHD3-208ENST00000470531 ANAPC15P60006 121 aa12.52□□□□□ -0.41
CHD3-208ENST00000470531 TTC39AQ5SRH9 613 aa12.52□□□□□ -0.41
CHD3-208ENST00000470531 ZNF589Q86UQ0 364 aaPredicted RBP12.52□□□□□ -0.41
CHD3-208ENST00000470531 ADGRB1O14514 1584 aa12.52□□□□□ -0.41
CHD3-208ENST00000470531 GPIHBP1Q8IV16 184 aa12.52□□□□□ -0.41
CHD3-208ENST00000470531 INTS4Q96HW7 963 aaKnown RBP12.52□□□□□ -0.41
CHD3-208ENST00000470531 SH2B1Q9NRF2 756 aaPredicted RBP12.52□□□□□ -0.41
CHD3-208ENST00000470531 FAM135BQ49AJ0 1406 aa12.52□□□□□ -0.41
CHD3-208ENST00000470531 CEP135Q66GS9 1140 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 PROSER2Q86WR7 435 aaPredicted RBP12.51□□□□□ -0.41
CHD3-208ENST00000470531 CEP57L1Q8IYX8 460 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 HELBQ8NG08 1087 aaPredicted RBP12.51□□□□□ -0.41
CHD3-208ENST00000470531 CFAP45Q9UL16 551 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 GOLGA8BA8MQT2 603 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 GOLGA8FQ08AF8 430 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 GOLGA8DPQ0D2H9 430 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 ANKRD1Q15327 319 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 ANKRD24Q8TF21 1146 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 GTF3C6Q969F1 213 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 PRIMPOLQ96LW4 560 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 ORAI2Q96SN7 254 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 ATP10DQ9P241 1426 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 TCHHQ07283 1943 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 ZBTB22O15209 634 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 PPARDQ03181 441 aa12.51□□□□□ -0.41
CHD3-208ENST00000470531 COL9A3Q14050 684 aaPredicted RBP12.51□□□□□ -0.41
CHD3-208ENST00000470531 GLI2P10070 1586 aa12.5□□□□□ -0.41
CHD3-208ENST00000470531 RAD21O60216 631 aa12.5□□□□□ -0.41
CHD3-208ENST00000470531 ZNF526Q8TF50 670 aaPredicted RBP12.5□□□□□ -0.41
CHD3-208ENST00000470531 KCNF1Q9H3M0 494 aa12.5□□□□□ -0.41
CHD3-208ENST00000470531 GPHNQ9NQX3 736 aaPredicted RBP12.5□□□□□ -0.41
CHD3-208ENST00000470531 CNNM1Q9NRU3 951 aa12.5□□□□□ -0.41
CHD3-208ENST00000470531 PPRC1Q5VV67 1664 aaKnown RBP12.5□□□□□ -0.41
CHD3-208ENST00000470531 C8orf76Q96K31 380 aa12.5□□□□□ -0.41
CHD3-208ENST00000470531 HYPKQ9NX55 129 aa12.5□□□□□ -0.41
CHD3-208ENST00000470531 ANKRD13DQ6ZTN6 518 aa12.5□□□□□ -0.41
CHD3-208ENST00000470531 KNDC1Q76NI1 1749 aa12.5□□□□□ -0.41
CHD3-208ENST00000470531 SFPQP23246 707 aaKnown RBP eCLIP12.49□□□□□ -0.41
CHD3-208ENST00000470531 MYL10Q9BUA6 226 aa12.49□□□□□ -0.41
CHD3-208ENST00000470531 CEP126Q9P2H0 1117 aa12.49□□□□□ -0.41
CHD3-208ENST00000470531 EFCAB6Q5THR3 1501 aa12.49□□□□□ -0.41
CHD3-208ENST00000470531 ZCCHC11Q5TAX3 1644 aaKnown RBP12.49□□□□□ -0.41
CHD3-208ENST00000470531 CCDC69A6NI79 296 aa12.49□□□□□ -0.41
CHD3-208ENST00000470531 TOM1L2Q6ZVM7 507 aa12.49□□□□□ -0.41
CHD3-208ENST00000470531 LEO1Q8WVC0 666 aaPredicted RBP12.49□□□□□ -0.41
CHD3-208ENST00000470531 LSG1Q9H089 658 aaKnown RBP12.49□□□□□ -0.41
CHD3-208ENST00000470531 NAT10Q9H0A0 1025 aaKnown RBP12.49□□□□□ -0.41
CHD3-208ENST00000470531 TATP17735 454 aaPredicted RBP12.49□□□□□ -0.41
CHD3-208ENST00000470531 CCDC57Q2TAC2 916 aa12.49□□□□□ -0.41
CHD3-208ENST00000470531 TEX35Q5T0J7 233 aa12.49□□□□□ -0.41
CHD3-208ENST00000470531 ORC3Q9UBD5 711 aaPredicted RBP12.49□□□□□ -0.41
CHD3-208ENST00000470531 DNAI1Q9UI46 699 aa12.49□□□□□ -0.41
CHD3-208ENST00000470531 PTPDC1A2A3K4 754 aa12.48□□□□□ -0.41
CHD3-208ENST00000470531 HIP1O00291 1037 aa12.48□□□□□ -0.41
CHD3-208ENST00000470531 GTF2F1P35269 517 aaKnown RBP eCLIP12.48□□□□□ -0.41
CHD3-208ENST00000470531 CUL4AQ13619 759 aa12.48□□□□□ -0.41
CHD3-208ENST00000470531 CPLX2Q6PUV4 134 aaKnown RBP12.48□□□□□ -0.41
CHD3-208ENST00000470531 KSR2Q6VAB6 950 aa12.48□□□□□ -0.41
CHD3-208ENST00000470531 SYT10Q6XYQ8 523 aa12.48□□□□□ -0.41
CHD3-208ENST00000470531 NRXN1Q9ULB1 1477 aa12.48□□□□□ -0.41
CHD3-208ENST00000470531 KLF18A0A0U1RQI7 1052 aa12.48□□□□□ -0.41
CHD3-208ENST00000470531 PCMTD1Q96MG8 357 aaPredicted RBP12.48□□□□□ -0.41
CHD3-208ENST00000470531 ZNF396Q96N95 335 aaPredicted RBP12.48□□□□□ -0.41
CHD3-208ENST00000470531 IFNKQ9P0W0 207 aa12.48□□□□□ -0.41
CHD3-208ENST00000470531 CAMSAP1Q5T5Y3 1602 aa12.48□□□□□ -0.41
CHD3-208ENST00000470531 AKAP17AQ02040 695 aaKnown RBP12.48□□□□□ -0.41
CHD3-208ENST00000470531 ZKSCAN3Q9BRR0 538 aa12.48□□□□□ -0.41
CHD3-208ENST00000470531 ABCF2Q9UG63 623 aa12.48□□□□□ -0.41
CHD3-208ENST00000470531 MYO3AQ8NEV4 1616 aa12.47□□□□□ -0.41
CHD3-208ENST00000470531 SSH3Q8TE77 659 aa12.47□□□□□ -0.41
CHD3-208ENST00000470531 PUS7Q96PZ0 661 aaKnown RBP12.47□□□□□ -0.41
CHD3-208ENST00000470531 ELF2Q15723 593 aa12.47□□□□□ -0.41
CHD3-208ENST00000470531 VPS53Q5VIR6 699 aa12.47□□□□□ -0.41
CHD3-208ENST00000470531 ARHGEF40Q8TER5 1519 aa12.47□□□□□ -0.41
CHD3-208ENST00000470531 FLT4P35916 1363 aa12.47□□□□□ -0.41
CHD3-208ENST00000470531 EIF4A1P60842 406 aaKnown RBP12.47□□□□□ -0.41
CHD3-208ENST00000470531 ADGRB3O60242 1522 aa12.47□□□□□ -0.41
CHD3-208ENST00000470531 PNPLA6Q8IY17 1366 aa12.46□□□□□ -0.41
CHD3-208ENST00000470531 hCG_1642624A0A1W2PR95 340 aa12.46□□□□□ -0.41
CHD3-208ENST00000470531 MINDY4BA8MYZ0 360 aa12.46□□□□□ -0.41
CHD3-208ENST00000470531 CCDC158Q5M9N0 1113 aa12.46□□□□□ -0.41
CHD3-208ENST00000470531 OLFM4Q6UX06 510 aa12.46□□□□□ -0.41
CHD3-208ENST00000470531 CMTR1Q8N1G2 835 aaKnown RBP12.46□□□□□ -0.41
CHD3-208ENST00000470531 THEMISQ8N1K5 641 aaPredicted RBP12.46□□□□□ -0.41
CHD3-208ENST00000470531 KIF18AQ8NI77 898 aa12.46□□□□□ -0.41
CHD3-208ENST00000470531 DDX19AQ9NUU7 478 aaKnown RBP12.46□□□□□ -0.41
CHD3-208ENST00000470531 SLC3A2P08195 630 aaKnown RBP12.46□□□□□ -0.41
CHD3-208ENST00000470531 KIAA1524Q8TCG1 905 aa12.46□□□□□ -0.41
CHD3-208ENST00000470531 PI4K2BQ8TCG2 481 aa12.46□□□□□ -0.41
CHD3-208ENST00000470531 UBXN4Q92575 508 aa12.46□□□□□ -0.41
CHD3-208ENST00000470531 DHX8Q14562 1220 aaKnown RBP12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms