RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 CWC25Q9NXE8 425 aaPredicted RBP13.06□□□□□ -0.32
SF3A3-204ENST00000462258 PI4KAP2A4QPH2 592 aa13.05□□□□□ -0.32
SF3A3-204ENST00000462258 IQCA1LA6NCM1 817 aa13.05□□□□□ -0.32
SF3A3-204ENST00000462258 BBOX1O75936 387 aa13.05□□□□□ -0.32
SF3A3-204ENST00000462258 APLP1P51693 650 aa13.05□□□□□ -0.32
SF3A3-204ENST00000462258 EXOSC9Q06265 439 aaKnown RBP13.05□□□□□ -0.32
SF3A3-204ENST00000462258 SF3B3Q15393 1217 aaKnown RBP13.05□□□□□ -0.32
SF3A3-204ENST00000462258 KSR2Q6VAB6 950 aa13.05□□□□□ -0.32
SF3A3-204ENST00000462258 LARGE2Q8N3Y3 721 aa13.05□□□□□ -0.32
SF3A3-204ENST00000462258 PI4KAP1Q8N8J0 262 aa13.05□□□□□ -0.32
SF3A3-204ENST00000462258 L3MBTL3Q96JM7 780 aaPredicted RBP13.05□□□□□ -0.32
SF3A3-204ENST00000462258 MYH16Q9H6N6 1097 aa13.05□□□□□ -0.32
SF3A3-204ENST00000462258 SPINK5Q9NQ38 1064 aaPredicted RBP13.05□□□□□ -0.32
SF3A3-204ENST00000462258 FZD9O00144 591 aa13.04□□□□□ -0.32
SF3A3-204ENST00000462258 PPIP5K2O43314 1243 aa13.04□□□□□ -0.32
SF3A3-204ENST00000462258 SLC4A2P04920 1241 aa13.04□□□□□ -0.32
SF3A3-204ENST00000462258 PCCAP05165 728 aaPredicted RBP13.04□□□□□ -0.32
SF3A3-204ENST00000462258 HSP90B1P14625 803 aaKnown RBP13.04□□□□□ -0.32
SF3A3-204ENST00000462258 NEXNQ0ZGT2 675 aa13.04□□□□□ -0.32
SF3A3-204ENST00000462258 FLIIQ13045 1269 aa13.04□□□□□ -0.32
SF3A3-204ENST00000462258 DPP8Q6V1X1 898 aaPredicted RBP13.04□□□□□ -0.32
SF3A3-204ENST00000462258 G2E3Q7L622 706 aa13.04□□□□□ -0.32
SF3A3-204ENST00000462258 TMC4Q7Z404 712 aa13.04□□□□□ -0.32
SF3A3-204ENST00000462258 SP8Q8IXZ3 490 aa13.04□□□□□ -0.32
SF3A3-204ENST00000462258 EIF6P56537 245 aaKnown RBP13.03□□□□□ -0.32
SF3A3-204ENST00000462258 AOC3Q16853 763 aa13.03□□□□□ -0.32
SF3A3-204ENST00000462258 NIM1KQ8IY84 436 aa13.03□□□□□ -0.32
SF3A3-204ENST00000462258 MPNDQ8N594 471 aa13.03□□□□□ -0.32
SF3A3-204ENST00000462258 SUPT20HQ8NEM7 779 aa13.03□□□□□ -0.32
SF3A3-204ENST00000462258 CELF1Q92879 486 aaKnown RBP13.03□□□□□ -0.32
SF3A3-204ENST00000462258 RTFDC1Q9BY42 306 aaPredicted RBP13.03□□□□□ -0.32
SF3A3-204ENST00000462258 ZNF521Q96K83 1311 aa13.03□□□□□ -0.32
SF3A3-204ENST00000462258 CDHR2Q9BYE9 1310 aa13.03□□□□□ -0.32
SF3A3-204ENST00000462258 VAMP4O75379 141 aa13.02□□□□□ -0.33
SF3A3-204ENST00000462258 IGKV5-2P06315 115 aa13.02□□□□□ -0.33
SF3A3-204ENST00000462258 FKBP5Q13451 457 aaPredicted RBP13.02□□□□□ -0.33
SF3A3-204ENST00000462258 CWF19L2Q2TBE0 894 aaKnown RBP13.02□□□□□ -0.33
SF3A3-204ENST00000462258 GPC2Q8N158 579 aa13.02□□□□□ -0.33
SF3A3-204ENST00000462258 NEURL1BA8MQ27 555 aa13.01□□□□□ -0.33
SF3A3-204ENST00000462258 PDE8AO60658 829 aa13.01□□□□□ -0.33
SF3A3-204ENST00000462258 POTEIP0CG38 1075 aa13.01□□□□□ -0.33
SF3A3-204ENST00000462258 POTEJP0CG39 1038 aa13.01□□□□□ -0.33
SF3A3-204ENST00000462258 CCDC152Q4G0S7 254 aa13.01□□□□□ -0.33
SF3A3-204ENST00000462258 JARID2Q92833 1246 aaPredicted RBP13.01□□□□□ -0.33
SF3A3-204ENST00000462258 VPS33BQ9H267 617 aa13.01□□□□□ -0.33
SF3A3-204ENST00000462258 TAF1DQ9H5J8 278 aaPredicted RBP13.01□□□□□ -0.33
SF3A3-204ENST00000462258 HACL1Q9UJ83 578 aa13.01□□□□□ -0.33
SF3A3-204ENST00000462258 GJA3Q9Y6H8 435 aa13.01□□□□□ -0.33
SF3A3-204ENST00000462258 A0A1B0GUL6 1792 aa13□□□□□ -0.33
SF3A3-204ENST00000462258 KIAA2012Q0VF49 1180 aa13□□□□□ -0.33
SF3A3-204ENST00000462258 CHADLQ6NUI6 762 aa13□□□□□ -0.33
SF3A3-204ENST00000462258 DNAAF4Q8WXU2 420 aa13□□□□□ -0.33
SF3A3-204ENST00000462258 CCDC85AQ96PX6 553 aaPredicted RBP13□□□□□ -0.33
SF3A3-204ENST00000462258 PSME4Q14997 1843 aa12.99□□□□□ -0.33
SF3A3-204ENST00000462258 EPHX2P34913 555 aa12.99□□□□□ -0.33
SF3A3-204ENST00000462258 CTSWP56202 376 aa12.99□□□□□ -0.33
SF3A3-204ENST00000462258 HTRA3P83110 453 aa12.99□□□□□ -0.33
SF3A3-204ENST00000462258 LDHDQ86WU2 507 aa12.99□□□□□ -0.33
SF3A3-204ENST00000462258 SEC31BQ9NQW1 1179 aa12.99□□□□□ -0.33
SF3A3-204ENST00000462258 LMOD1P29536 600 aaPredicted RBP12.98□□□□□ -0.33
SF3A3-204ENST00000462258 RPS8P62241 208 aaKnown RBP12.98□□□□□ -0.33
SF3A3-204ENST00000462258 GPSM2P81274 684 aa12.98□□□□□ -0.33
SF3A3-204ENST00000462258 EAPPQ56P03 285 aaPredicted RBP12.98□□□□□ -0.33
SF3A3-204ENST00000462258 UBE3BQ7Z3V4 1068 aa12.98□□□□□ -0.33
SF3A3-204ENST00000462258 ZNRF3Q9ULT6 936 aa12.98□□□□□ -0.33
SF3A3-204ENST00000462258 NSFL1CQ9UNZ2 370 aaKnown RBP12.98□□□□□ -0.33
SF3A3-204ENST00000462258 RTL9Q8NET4 1388 aa12.97□□□□□ -0.33
SF3A3-204ENST00000462258 CCER2I3L3R5 266 aa12.97□□□□□ -0.33
SF3A3-204ENST00000462258 SCNN1DP51172 638 aa12.97□□□□□ -0.33
SF3A3-204ENST00000462258 GCKRQ14397 625 aa12.97□□□□□ -0.33
SF3A3-204ENST00000462258 LINS1Q8NG48 757 aa12.97□□□□□ -0.33
SF3A3-204ENST00000462258 SCN9AQ15858 1988 aa12.97□□□□□ -0.33
SF3A3-204ENST00000462258 E9PSI1 815 aa12.96□□□□□ -0.33
SF3A3-204ENST00000462258 C6orf229H3BNL8 230 aa12.96□□□□□ -0.33
SF3A3-204ENST00000462258 PNMA8AQ86V59 439 aaPredicted RBP12.96□□□□□ -0.33
SF3A3-204ENST00000462258 ANKRD18AQ8IVF6 992 aa12.96□□□□□ -0.33
SF3A3-204ENST00000462258 CDC5LQ99459 802 aaKnown RBP12.96□□□□□ -0.33
SF3A3-204ENST00000462258 EYA3Q99504 573 aa12.96□□□□□ -0.33
SF3A3-204ENST00000462258 F6X3S4 739 aa12.95□□□□□ -0.34
SF3A3-204ENST00000462258 H7C1W4 665 aa12.95□□□□□ -0.34
SF3A3-204ENST00000462258 UFL1O94874 794 aa12.95□□□□□ -0.34
SF3A3-204ENST00000462258 CXCL9Q07325 125 aa12.95□□□□□ -0.34
SF3A3-204ENST00000462258 WASHC4Q2M389 1173 aa12.95□□□□□ -0.34
SF3A3-204ENST00000462258 CIAPIN1Q6FI81 312 aa12.95□□□□□ -0.34
SF3A3-204ENST00000462258 TTLL11Q8NHH1 800 aa12.95□□□□□ -0.34
SF3A3-204ENST00000462258 TBC1D16Q8TBP0 767 aa12.95□□□□□ -0.34
SF3A3-204ENST00000462258 GPR101Q96P66 508 aaPredicted RBP12.95□□□□□ -0.34
SF3A3-204ENST00000462258 GREM2Q9H772 168 aa12.95□□□□□ -0.34
SF3A3-204ENST00000462258 PODXL2Q9NZ53 605 aa12.95□□□□□ -0.34
SF3A3-204ENST00000462258 POLLQ9UGP5 575 aa12.95□□□□□ -0.34
SF3A3-204ENST00000462258 ZNF646O15015 1829 aaPredicted RBP12.95□□□□□ -0.34
SF3A3-204ENST00000462258 XDHP47989 1333 aa12.94□□□□□ -0.34
SF3A3-204ENST00000462258 TRPM7Q96QT4 1865 aa12.94□□□□□ -0.34
SF3A3-204ENST00000462258 YDJCA8MPS7 323 aa12.94□□□□□ -0.34
SF3A3-204ENST00000462258 RIMBP2O15034 1052 aa12.94□□□□□ -0.34
SF3A3-204ENST00000462258 RAD17O75943 681 aa12.94□□□□□ -0.34
SF3A3-204ENST00000462258 GMPSP49915 693 aaPredicted RBP12.94□□□□□ -0.34
SF3A3-204ENST00000462258 CASP7P55210 303 aa12.94□□□□□ -0.34
SF3A3-204ENST00000462258 DNAJC5GQ8N7S2 189 aa12.94□□□□□ -0.34
SF3A3-204ENST00000462258 KLRG1Q96E93 195 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms