RNA–Protein interactions for RNA: ENST00000457373.5

RFX3-210, Transcript of regulatory factor X3, humanhuman

TSL 5

Gene RFX3, Length 822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-210ENST00000457373 RPGRQ92834 1020 aaKnown RBP12.84□□□□□ -0.35
RFX3-210ENST00000457373 ZBED9Q6R2W3 1325 aa12.84□□□□□ -0.35
RFX3-210ENST00000457373 DDX60Q8IY21 1712 aaKnown RBP12.83□□□□□ -0.36
RFX3-210ENST00000457373 C21orf2O43822 256 aa12.83□□□□□ -0.36
RFX3-210ENST00000457373 ALDH1B1P30837 517 aa12.83□□□□□ -0.36
RFX3-210ENST00000457373 ALDH1L2Q3SY69 923 aa12.83□□□□□ -0.36
RFX3-210ENST00000457373 SLC4A10Q6U841 1118 aa12.83□□□□□ -0.36
RFX3-210ENST00000457373 ZBTB38Q8NAP3 1195 aaPredicted RBP12.83□□□□□ -0.36
RFX3-210ENST00000457373 RBM17Q96I25 401 aaKnown RBP12.83□□□□□ -0.36
RFX3-210ENST00000457373 SMC4Q9NTJ3 1288 aa12.83□□□□□ -0.36
RFX3-210ENST00000457373 RIC1Q4ADV7 1423 aa12.82□□□□□ -0.36
RFX3-210ENST00000457373 NEURL1BA8MQ27 555 aa12.82□□□□□ -0.36
RFX3-210ENST00000457373 IRS4O14654 1257 aaPredicted RBP12.82□□□□□ -0.36
RFX3-210ENST00000457373 PCCAP05165 728 aaPredicted RBP12.82□□□□□ -0.36
RFX3-210ENST00000457373 CT47B1P0C2W7 299 aaPredicted RBP12.82□□□□□ -0.36
RFX3-210ENST00000457373 YY1P25490 414 aa12.82□□□□□ -0.36
RFX3-210ENST00000457373 CRY2Q49AN0 593 aa12.82□□□□□ -0.36
RFX3-210ENST00000457373 PRPF40BQ6NWY9 871 aaKnown RBP12.82□□□□□ -0.36
RFX3-210ENST00000457373 TAF1P21675 1872 aa12.81□□□□□ -0.36
RFX3-210ENST00000457373 LINS1Q8NG48 757 aa12.81□□□□□ -0.36
RFX3-210ENST00000457373 CCDC88AQ3V6T2 1871 aa12.8□□□□□ -0.36
RFX3-210ENST00000457373 STK25O00506 426 aa12.8□□□□□ -0.36
RFX3-210ENST00000457373 HOXA10P31260 410 aaPredicted RBP12.8□□□□□ -0.36
RFX3-210ENST00000457373 RARSP54136 660 aaKnown RBP12.8□□□□□ -0.36
RFX3-210ENST00000457373 GCKRQ14397 625 aa12.8□□□□□ -0.36
RFX3-210ENST00000457373 BEND3Q5T5X7 828 aa12.8□□□□□ -0.36
RFX3-210ENST00000457373 H7C1W4 665 aa12.79□□□□□ -0.36
RFX3-210ENST00000457373 PDE8AO60658 829 aa12.79□□□□□ -0.36
RFX3-210ENST00000457373 RASSF7Q02833 373 aa12.79□□□□□ -0.36
RFX3-210ENST00000457373 OLFM4Q6UX06 510 aa12.79□□□□□ -0.36
RFX3-210ENST00000457373 DDX46Q7L014 1031 aaKnown RBP12.79□□□□□ -0.36
RFX3-210ENST00000457373 CCDC85AQ96PX6 553 aaPredicted RBP12.79□□□□□ -0.36
RFX3-210ENST00000457373 CRAMP1Q96RY5 1269 aa12.79□□□□□ -0.36
RFX3-210ENST00000457373 SRCIN1Q9C0H9 1055 aa12.79□□□□□ -0.36
RFX3-210ENST00000457373 NOB1Q9ULX3 412 aaKnown RBP12.79□□□□□ -0.36
RFX3-210ENST00000457373 PTPRCP08575 1304 aa12.79□□□□□ -0.36
RFX3-210ENST00000457373 HSP90B1P14625 803 aaKnown RBP12.78□□□□□ -0.36
RFX3-210ENST00000457373 MNX1P50219 401 aaPredicted RBP12.78□□□□□ -0.36
RFX3-210ENST00000457373 SF3B3Q15393 1217 aaKnown RBP12.78□□□□□ -0.36
RFX3-210ENST00000457373 UBE3BQ7Z3V4 1068 aa12.78□□□□□ -0.36
RFX3-210ENST00000457373 ABCC4O15439 1325 aa12.78□□□□□ -0.36
RFX3-210ENST00000457373 CDHR2Q9BYE9 1310 aa12.78□□□□□ -0.36
RFX3-210ENST00000457373 SBF1O95248 1867 aa12.78□□□□□ -0.36
RFX3-210ENST00000457373 FER1L6Q2WGJ9 1857 aa12.77□□□□□ -0.37
RFX3-210ENST00000457373 PPEF1O14829 653 aaPredicted RBP12.77□□□□□ -0.37
RFX3-210ENST00000457373 BCAR3O75815 825 aa12.77□□□□□ -0.37
RFX3-210ENST00000457373 CHRM1P11229 460 aaPredicted RBP12.77□□□□□ -0.37
RFX3-210ENST00000457373 CCDC93Q567U6 631 aa12.77□□□□□ -0.37
RFX3-210ENST00000457373 SOGA3Q5TF21 947 aa12.77□□□□□ -0.37
RFX3-210ENST00000457373 C7orf43Q8WVR3 580 aa12.77□□□□□ -0.37
RFX3-210ENST00000457373 YTHDC1Q96MU7 727 aaKnown RBP12.77□□□□□ -0.37
RFX3-210ENST00000457373 CREBZFQ9NS37 354 aa12.77□□□□□ -0.37
RFX3-210ENST00000457373 MYH3P11055 1940 aa12.76□□□□□ -0.37
RFX3-210ENST00000457373 NFKBIEO00221 500 aa12.76□□□□□ -0.37
RFX3-210ENST00000457373 ALDH1L1O75891 902 aa12.76□□□□□ -0.37
RFX3-210ENST00000457373 GRAPQ13588 217 aa12.76□□□□□ -0.37
RFX3-210ENST00000457373 C9orf131Q5VYM1 1079 aa12.76□□□□□ -0.37
RFX3-210ENST00000457373 GRAPLQ8TC17 118 aaPredicted RBP12.76□□□□□ -0.37
RFX3-210ENST00000457373 FRAT1Q92837 279 aaPredicted RBP12.76□□□□□ -0.37
RFX3-210ENST00000457373 FAM212AQ96EL1 285 aa12.76□□□□□ -0.37
RFX3-210ENST00000457373 TMX4Q9H1E5 349 aaPredicted RBP12.76□□□□□ -0.37
RFX3-210ENST00000457373 C9orf78Q9NZ63 289 aaPredicted RBP12.76□□□□□ -0.37
RFX3-210ENST00000457373 RNF181Q9P0P0 153 aa12.76□□□□□ -0.37
RFX3-210ENST00000457373 SRCAPQ6ZRS2 3230 aa12.76□□□□□ -0.37
RFX3-210ENST00000457373 BBOX1O75936 387 aa12.75□□□□□ -0.37
RFX3-210ENST00000457373 BRPF1P55201 1214 aaPredicted RBP12.75□□□□□ -0.37
RFX3-210ENST00000457373 CASP7P55210 303 aa12.75□□□□□ -0.37
RFX3-210ENST00000457373 CCDC152Q4G0S7 254 aa12.75□□□□□ -0.37
RFX3-210ENST00000457373 SLC51AQ86UW1 340 aa12.75□□□□□ -0.37
RFX3-210ENST00000457373 CELF1Q92879 486 aaKnown RBP12.75□□□□□ -0.37
RFX3-210ENST00000457373 API5Q9BZZ5 524 aaKnown RBP12.75□□□□□ -0.37
RFX3-210ENST00000457373 SEC31BQ9NQW1 1179 aa12.75□□□□□ -0.37
RFX3-210ENST00000457373 GRM8O00222 908 aa12.74□□□□□ -0.37
RFX3-210ENST00000457373 PRELPP51888 382 aa12.74□□□□□ -0.37
RFX3-210ENST00000457373 CTSWP56202 376 aa12.74□□□□□ -0.37
RFX3-210ENST00000457373 CC2D2BQ6DHV5 1058 aa12.74□□□□□ -0.37
RFX3-210ENST00000457373 RTKN2Q8IZC4 609 aa12.74□□□□□ -0.37
RFX3-210ENST00000457373 SPDYE1Q8NFV5 336 aaPredicted RBP12.74□□□□□ -0.37
RFX3-210ENST00000457373 TTLL11Q8NHH1 800 aa12.74□□□□□ -0.37
RFX3-210ENST00000457373 TAOK3Q9H2K8 898 aa12.74□□□□□ -0.37
RFX3-210ENST00000457373 KIF16BQ96L93 1317 aa12.73□□□□□ -0.37
RFX3-210ENST00000457373 IPO8O15397 1037 aaKnown RBP12.73□□□□□ -0.37
RFX3-210ENST00000457373 LMNB1P20700 586 aa12.73□□□□□ -0.37
RFX3-210ENST00000457373 FKBP4Q02790 459 aaKnown RBP eCLIP12.73□□□□□ -0.37
RFX3-210ENST00000457373 SP8Q8IXZ3 490 aa12.73□□□□□ -0.37
RFX3-210ENST00000457373 PLA2G12BQ9BX93 195 aa12.73□□□□□ -0.37
RFX3-210ENST00000457373 ATP6V0A2Q9Y487 856 aa12.73□□□□□ -0.37
RFX3-210ENST00000457373 COL4A1P02462 1669 aa12.73□□□□□ -0.37
RFX3-210ENST00000457373 NBPF7P0C2Y1 421 aaPredicted RBP12.72□□□□□ -0.37
RFX3-210ENST00000457373 RPS8P62241 208 aaKnown RBP12.72□□□□□ -0.37
RFX3-210ENST00000457373 ZNF526Q8TF50 670 aaPredicted RBP12.72□□□□□ -0.37
RFX3-210ENST00000457373 ARHGAP45Q92619 1136 aa12.72□□□□□ -0.37
RFX3-210ENST00000457373 GREM2Q9H772 168 aa12.72□□□□□ -0.37
RFX3-210ENST00000457373 ZNF277Q9NRM2 450 aaPredicted RBP12.72□□□□□ -0.37
RFX3-210ENST00000457373 TNNQ9UQP3 1299 aa12.72□□□□□ -0.37
RFX3-210ENST00000457373 CHMP3Q9Y3E7 222 aa12.72□□□□□ -0.37
RFX3-210ENST00000457373 DICER1Q9UPY3 1922 aaKnown RBP12.72□□□□□ -0.37
RFX3-210ENST00000457373 SPEF2Q9C093 1822 aa12.72□□□□□ -0.37
RFX3-210ENST00000457373 LTBP3Q9NS15 1303 aa12.71□□□□□ -0.37
RFX3-210ENST00000457373 CSF1RP07333 972 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms