RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 TTLL11Q8NHH1 800 aa23.01■■□□□ 1.27
HDAC6-208ENST00000438518 PPP1R1BQ9UD71 204 aaPredicted RBP23.01■■□□□ 1.27
HDAC6-208ENST00000438518 H0YIN7 160 aa23■■□□□ 1.27
HDAC6-208ENST00000438518 RPAP2Q8IXW5 612 aaPredicted RBP23■■□□□ 1.27
HDAC6-208ENST00000438518 CCDC24Q8N4L8 307 aa23■■□□□ 1.27
HDAC6-208ENST00000438518 LMBR1LQ6UX01 489 aa22.99■■□□□ 1.27
HDAC6-208ENST00000438518 RPGRQ92834 1020 aaKnown RBP22.99■■□□□ 1.27
HDAC6-208ENST00000438518 MASTLQ96GX5 879 aa22.99■■□□□ 1.27
HDAC6-208ENST00000438518 SRGNP10124 158 aa22.98■■□□□ 1.27
HDAC6-208ENST00000438518 NPR1P16066 1061 aa22.98■■□□□ 1.27
HDAC6-208ENST00000438518 HOXA10P31260 410 aaPredicted RBP22.98■■□□□ 1.27
HDAC6-208ENST00000438518 EPHA10Q5JZY3 1008 aa22.98■■□□□ 1.27
HDAC6-208ENST00000438518 ANKRD44Q8N8A2 993 aa22.98■■□□□ 1.27
HDAC6-208ENST00000438518 EXOC6Q8TAG9 804 aa22.98■■□□□ 1.27
HDAC6-208ENST00000438518 RBM17Q96I25 401 aaKnown RBP22.98■■□□□ 1.27
HDAC6-208ENST00000438518 BRCA1P38398 1863 aaKnown RBP22.98■■□□□ 1.27
HDAC6-208ENST00000438518 ALDH1B1P30837 517 aa22.97■■□□□ 1.27
HDAC6-208ENST00000438518 ERICH6BQ5W0A0 696 aa22.97■■□□□ 1.27
HDAC6-208ENST00000438518 STYK1Q6J9G0 422 aa22.97■■□□□ 1.27
HDAC6-208ENST00000438518 DDX46Q7L014 1031 aaKnown RBP22.97■■□□□ 1.27
HDAC6-208ENST00000438518 C2CD5Q86YS7 1000 aa22.97■■□□□ 1.27
HDAC6-208ENST00000438518 IFIT5Q13325 482 aaKnown RBP22.96■■□□□ 1.27
HDAC6-208ENST00000438518 CCDC57Q2TAC2 916 aa22.96■■□□□ 1.27
HDAC6-208ENST00000438518 CRAMP1Q96RY5 1269 aa22.96■■□□□ 1.27
HDAC6-208ENST00000438518 CDC5LQ99459 802 aaKnown RBP22.96■■□□□ 1.27
HDAC6-208ENST00000438518 ANKRD18BA2A2Z9 1011 aa22.95■■□□□ 1.26
HDAC6-208ENST00000438518 HMMRO75330 724 aa22.95■■□□□ 1.26
HDAC6-208ENST00000438518 IRX6P78412 446 aaPredicted RBP22.95■■□□□ 1.26
HDAC6-208ENST00000438518 CEP85Q6P2H3 762 aa22.95■■□□□ 1.26
HDAC6-208ENST00000438518 C3orf67Q6ZVT6 689 aa22.95■■□□□ 1.26
HDAC6-208ENST00000438518 GREM2Q9H772 168 aa22.95■■□□□ 1.26
HDAC6-208ENST00000438518 ITGA6P23229 1130 aa22.94■■□□□ 1.26
HDAC6-208ENST00000438518 ATP8B2P98198 1209 aa22.94■■□□□ 1.26
HDAC6-208ENST00000438518 FAM161AQ3B820 660 aa22.94■■□□□ 1.26
HDAC6-208ENST00000438518 TMC4Q7Z404 712 aa22.94■■□□□ 1.26
HDAC6-208ENST00000438518 CNKSR1Q969H4 720 aa22.94■■□□□ 1.26
HDAC6-208ENST00000438518 C1orf115Q9H7X2 142 aa22.94■■□□□ 1.26
HDAC6-208ENST00000438518 CHMP3Q9Y3E7 222 aa22.94■■□□□ 1.26
HDAC6-208ENST00000438518 SRGAP3O43295 1099 aa22.93■■□□□ 1.26
HDAC6-208ENST00000438518 FHDC1Q9C0D6 1143 aaPredicted RBP22.93■■□□□ 1.26
HDAC6-208ENST00000438518 FBXO3Q9UK99 471 aa22.93■■□□□ 1.26
HDAC6-208ENST00000438518 CACNA1SQ13698 1873 aa22.92■■□□□ 1.26
HDAC6-208ENST00000438518 GRAPQ13588 217 aa22.92■■□□□ 1.26
HDAC6-208ENST00000438518 KLHL34Q8N239 644 aa22.92■■□□□ 1.26
HDAC6-208ENST00000438518 GRAPLQ8TC17 118 aaPredicted RBP22.92■■□□□ 1.26
HDAC6-208ENST00000438518 SSH3Q8TE77 659 aa22.92■■□□□ 1.26
HDAC6-208ENST00000438518 LRRC37AA6NMS7 1700 aa22.91■■□□□ 1.26
HDAC6-208ENST00000438518 SPEF2Q9C093 1822 aa22.9■■□□□ 1.26
HDAC6-208ENST00000438518 BBOX1O75936 387 aa22.9■■□□□ 1.26
HDAC6-208ENST00000438518 DPEP1P16444 411 aa22.9■■□□□ 1.26
HDAC6-208ENST00000438518 CHRNA5P30532 468 aa22.9■■□□□ 1.26
HDAC6-208ENST00000438518 IGHMBP2P38935 993 aaKnown RBP22.9■■□□□ 1.26
HDAC6-208ENST00000438518 POLA2Q14181 598 aa22.9■■□□□ 1.26
HDAC6-208ENST00000438518 TAF7LQ5H9L4 462 aa22.9■■□□□ 1.26
HDAC6-208ENST00000438518 ANKRD18AQ8IVF6 992 aa22.9■■□□□ 1.26
HDAC6-208ENST00000438518 CCDC85AQ96PX6 553 aaPredicted RBP22.9■■□□□ 1.26
HDAC6-208ENST00000438518 PIM2Q9P1W9 311 aa22.9■■□□□ 1.26
HDAC6-208ENST00000438518 ZNF622Q969S3 477 aaKnown RBP eCLIP22.89■■□□□ 1.253e-7■■□□□ 12.7
HDAC6-208ENST00000438518 SYT17Q9BSW7 474 aa22.89■■□□□ 1.25
HDAC6-208ENST00000438518 COPRSQ9NQ92 184 aa22.89■■□□□ 1.25
HDAC6-208ENST00000438518 TAF1P21675 1872 aa22.88■■□□□ 1.25
HDAC6-208ENST00000438518 ARFGEF1Q9Y6D6 1849 aa22.88■■□□□ 1.25
HDAC6-208ENST00000438518 PNMA6EA0A0J9YXQ4 647 aa22.88■■□□□ 1.25
HDAC6-208ENST00000438518 KCNA3P22001 575 aa22.88■■□□□ 1.25
HDAC6-208ENST00000438518 RFX5P48382 616 aaPredicted RBP22.88■■□□□ 1.25
HDAC6-208ENST00000438518 RPS8P62241 208 aaKnown RBP22.88■■□□□ 1.25
HDAC6-208ENST00000438518 TTLL6Q8N841 843 aa22.88■■□□□ 1.25
HDAC6-208ENST00000438518 MPHOSPH8Q99549 860 aa22.88■■□□□ 1.25
HDAC6-208ENST00000438518 SEC31BQ9NQW1 1179 aa22.88■■□□□ 1.25
HDAC6-208ENST00000438518 A0A0G2JLW4 131 aa22.87■■□□□ 1.25
HDAC6-208ENST00000438518 BSDC1Q9NW68 430 aaPredicted RBP22.87■■□□□ 1.25
HDAC6-208ENST00000438518 PCDHB15Q9Y5E8 787 aa22.87■■□□□ 1.25
HDAC6-208ENST00000438518 PTPN12Q05209 780 aaKnown RBP22.86■■□□□ 1.25
HDAC6-208ENST00000438518 HDAC1Q13547 482 aaPredicted RBP22.86■■□□□ 1.25
HDAC6-208ENST00000438518 GRIPAP1Q4V328 841 aa22.86■■□□□ 1.25
HDAC6-208ENST00000438518 HSP90AB4PQ58FF6 505 aa22.86■■□□□ 1.25
HDAC6-208ENST00000438518 CELF1Q92879 486 aaKnown RBP22.86■■□□□ 1.25
HDAC6-208ENST00000438518 TMX4Q9H1E5 349 aaPredicted RBP22.86■■□□□ 1.25
HDAC6-208ENST00000438518 SLX4Q8IY92 1834 aa22.85■■□□□ 1.25
HDAC6-208ENST00000438518 PPEF1O14829 653 aaPredicted RBP22.85■■□□□ 1.25
HDAC6-208ENST00000438518 CIAO1O76071 339 aa22.85■■□□□ 1.25
HDAC6-208ENST00000438518 CC2D2BQ6DHV5 1058 aa22.85■■□□□ 1.25
HDAC6-208ENST00000438518 PRPF40BQ6NWY9 871 aaKnown RBP22.85■■□□□ 1.25
HDAC6-208ENST00000438518 SIRT2Q8IXJ6 389 aa22.85■■□□□ 1.25
HDAC6-208ENST00000438518 NLGN2Q8NFZ4 835 aa22.85■■□□□ 1.25
HDAC6-208ENST00000438518 A0A1B0GUL6 1792 aa22.85■■□□□ 1.25
HDAC6-208ENST00000438518 DALRD3Q5D0E6 543 aaKnown RBP22.84■■□□□ 1.25
HDAC6-208ENST00000438518 SOGA3Q5TF21 947 aa22.84■■□□□ 1.25
HDAC6-208ENST00000438518 LDHAL6AQ6ZMR3 332 aa22.84■■□□□ 1.25
HDAC6-208ENST00000438518 NOP58Q9Y2X3 529 aaKnown RBP22.84■■□□□ 1.25
HDAC6-208ENST00000438518 COL4A1P02462 1669 aa22.84■■□□□ 1.25
HDAC6-208ENST00000438518 SP8Q8IXZ3 490 aa22.83■■□□□ 1.25
HDAC6-208ENST00000438518 RWDD1Q9H446 243 aaPredicted RBP22.83■■□□□ 1.25
HDAC6-208ENST00000438518 ATP6V0A2Q9Y487 856 aa22.83■■□□□ 1.25
HDAC6-208ENST00000438518 EYA2O00167 538 aa22.82■■□□□ 1.24
HDAC6-208ENST00000438518 IL15P40933 162 aaPredicted RBP22.82■■□□□ 1.24
HDAC6-208ENST00000438518 CNNM1Q9NRU3 951 aa22.82■■□□□ 1.24
HDAC6-208ENST00000438518 MROH5Q6ZUA9 1318 aa22.82■■□□□ 1.24
HDAC6-208ENST00000438518 ERC1Q8IUD2 1116 aa22.81■■□□□ 1.24
HDAC6-208ENST00000438518 ZNF594Q96JF6 807 aaPredicted RBP22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms