RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 ZNF277Q9NRM2 450 aaPredicted RBP18.72■□□□□ 0.59
NIF3L1-205ENST00000409588 SF3B3Q15393 1217 aaKnown RBP18.71■□□□□ 0.59
NIF3L1-205ENST00000409588 CCDC191Q8NCU4 936 aa18.71■□□□□ 0.59
NIF3L1-205ENST00000409588 WDR90Q96KV7 1748 aa18.71■□□□□ 0.59
NIF3L1-205ENST00000409588 DDNO94850 711 aaPredicted RBP18.7■□□□□ 0.58
NIF3L1-205ENST00000409588 HCLS1P14317 486 aaPredicted RBP18.7■□□□□ 0.58
NIF3L1-205ENST00000409588 OLFM4Q6UX06 510 aa18.7■□□□□ 0.58
NIF3L1-205ENST00000409588 C3orf67Q6ZVT6 689 aa18.7■□□□□ 0.58
NIF3L1-205ENST00000409588 ZBTB38Q8NAP3 1195 aaPredicted RBP18.7■□□□□ 0.58
NIF3L1-205ENST00000409588 PHAXQ9H814 394 aaKnown RBP18.7■□□□□ 0.58
NIF3L1-205ENST00000409588 TIAM2Q8IVF5 1701 aa18.69■□□□□ 0.58
NIF3L1-205ENST00000409588 SNED1Q8TER0 1413 aa18.69■□□□□ 0.58
NIF3L1-205ENST00000409588 ANKRD36CQ5JPF3 1778 aa18.69■□□□□ 0.58
NIF3L1-205ENST00000409588 GRAPQ13588 217 aa18.69■□□□□ 0.58
NIF3L1-205ENST00000409588 GPC2Q8N158 579 aa18.69■□□□□ 0.58
NIF3L1-205ENST00000409588 GRAPLQ8TC17 118 aaPredicted RBP18.69■□□□□ 0.58
NIF3L1-205ENST00000409588 RTFDC1Q9BY42 306 aaPredicted RBP18.69■□□□□ 0.58
NIF3L1-205ENST00000409588 ABCC4O15439 1325 aa18.69■□□□□ 0.58
NIF3L1-205ENST00000409588 CACNA1SQ13698 1873 aa18.69■□□□□ 0.58
NIF3L1-205ENST00000409588 ATP5J2-PTCD1G3V325 749 aa18.68■□□□□ 0.58
NIF3L1-205ENST00000409588 EIF6P56537 245 aaKnown RBP18.68■□□□□ 0.58
NIF3L1-205ENST00000409588 TWISTNBQ3B726 338 aaPredicted RBP18.68■□□□□ 0.58
NIF3L1-205ENST00000409588 FAM89AQ96GI7 184 aa18.68■□□□□ 0.58
NIF3L1-205ENST00000409588 METTL22Q9BUU2 404 aaPredicted RBP18.68■□□□□ 0.58
NIF3L1-205ENST00000409588 KSR2Q6VAB6 950 aa18.67■□□□□ 0.58
NIF3L1-205ENST00000409588 PNMA8AQ86V59 439 aaPredicted RBP18.67■□□□□ 0.58
NIF3L1-205ENST00000409588 LARGE2Q8N3Y3 721 aa18.67■□□□□ 0.58
NIF3L1-205ENST00000409588 TSPYL6Q8N831 410 aa18.67■□□□□ 0.58
NIF3L1-205ENST00000409588 IRS4O14654 1257 aaPredicted RBP18.66■□□□□ 0.58
NIF3L1-205ENST00000409588 EVX2Q03828 476 aa18.66■□□□□ 0.58
NIF3L1-205ENST00000409588 NEXNQ0ZGT2 675 aa18.66■□□□□ 0.58
NIF3L1-205ENST00000409588 DPP8Q6V1X1 898 aaPredicted RBP18.66■□□□□ 0.58
NIF3L1-205ENST00000409588 MPNDQ8N594 471 aa18.66■□□□□ 0.58
NIF3L1-205ENST00000409588 TSR2Q969E8 191 aaKnown RBP18.66■□□□□ 0.58
NIF3L1-205ENST00000409588 CWC25Q9NXE8 425 aaPredicted RBP18.66■□□□□ 0.58
NIF3L1-205ENST00000409588 PCCAP05165 728 aaPredicted RBP18.65■□□□□ 0.58
NIF3L1-205ENST00000409588 CHADLQ6NUI6 762 aa18.65■□□□□ 0.58
NIF3L1-205ENST00000409588 DNAJC5GQ8N7S2 189 aa18.65■□□□□ 0.58
NIF3L1-205ENST00000409588 MYD88Q99836 296 aa18.65■□□□□ 0.58
NIF3L1-205ENST00000409588 HACL1Q9UJ83 578 aa18.65■□□□□ 0.58
NIF3L1-205ENST00000409588 TCERG1O14776 1098 aaKnown RBP18.64■□□□□ 0.57
NIF3L1-205ENST00000409588 LDHDQ86WU2 507 aa18.64■□□□□ 0.57
NIF3L1-205ENST00000409588 NIM1KQ8IY84 436 aa18.64■□□□□ 0.57
NIF3L1-205ENST00000409588 TAF1DQ9H5J8 278 aaPredicted RBP18.64■□□□□ 0.57
NIF3L1-205ENST00000409588 MYH16Q9H6N6 1097 aa18.64■□□□□ 0.57
NIF3L1-205ENST00000409588 FAM9BQ8IZU0 186 aa18.63■□□□□ 0.57
NIF3L1-205ENST00000409588 MAP3K2Q9Y2U5 619 aa18.63■□□□□ 0.57
NIF3L1-205ENST00000409588 SCN4AP35499 1836 aa18.63■□□□□ 0.57
NIF3L1-205ENST00000409588 PI4KAP2A4QPH2 592 aa18.62■□□□□ 0.57
NIF3L1-205ENST00000409588 PPIP5K2O43314 1243 aa18.62■□□□□ 0.57
NIF3L1-205ENST00000409588 PDE8AO60658 829 aa18.62■□□□□ 0.57
NIF3L1-205ENST00000409588 RPS8P62241 208 aaKnown RBP18.62■□□□□ 0.57
NIF3L1-205ENST00000409588 CCDC152Q4G0S7 254 aa18.62■□□□□ 0.57
NIF3L1-205ENST00000409588 PI4KAP1Q8N8J0 262 aa18.62■□□□□ 0.57
NIF3L1-205ENST00000409588 ZNRF3Q9ULT6 936 aa18.62■□□□□ 0.57
NIF3L1-205ENST00000409588 ZNF541Q9H0D2 1346 aa18.61■□□□□ 0.57
NIF3L1-205ENST00000409588 FANCIQ9NVI1 1328 aa18.61■□□□□ 0.57
NIF3L1-205ENST00000409588 VAMP4O75379 141 aa18.61■□□□□ 0.57
NIF3L1-205ENST00000409588 LMOD1P29536 600 aaPredicted RBP18.61■□□□□ 0.57
NIF3L1-205ENST00000409588 KIAA2012Q0VF49 1180 aa18.61■□□□□ 0.57
NIF3L1-205ENST00000409588 CLEC11AQ9Y240 323 aa18.61■□□□□ 0.57
NIF3L1-205ENST00000409588 CDHR2Q9BYE9 1310 aa18.6■□□□□ 0.57
NIF3L1-205ENST00000409588 EPHX2P34913 555 aa18.6■□□□□ 0.57
NIF3L1-205ENST00000409588 TNIP1Q15025 636 aa18.59■□□□□ 0.57
NIF3L1-205ENST00000409588 KLRG1Q96E93 195 aa18.59■□□□□ 0.57
NIF3L1-205ENST00000409588 AOC3Q16853 763 aa18.58■□□□□ 0.56
NIF3L1-205ENST00000409588 RTL5Q5HYW3 569 aaPredicted RBP18.58■□□□□ 0.56
NIF3L1-205ENST00000409588 CELF1Q92879 486 aaKnown RBP18.58■□□□□ 0.56
NIF3L1-205ENST00000409588 EYA3Q99504 573 aa18.58■□□□□ 0.56
NIF3L1-205ENST00000409588 NSFL1CQ9UNZ2 370 aaKnown RBP18.58■□□□□ 0.56
NIF3L1-205ENST00000409588 SALL2Q9Y467 1007 aaPredicted RBP18.58■□□□□ 0.56
NIF3L1-205ENST00000409588 GJA3Q9Y6H8 435 aa18.58■□□□□ 0.56
NIF3L1-205ENST00000409588 EXOSC9Q06265 439 aaKnown RBP18.57■□□□□ 0.56
NIF3L1-205ENST00000409588 FLIIQ13045 1269 aa18.57■□□□□ 0.56
NIF3L1-205ENST00000409588 WASHC4Q2M389 1173 aa18.57■□□□□ 0.56
NIF3L1-205ENST00000409588 USP50Q70EL3 339 aaPredicted RBP18.57■□□□□ 0.56
NIF3L1-205ENST00000409588 SPDYE1Q8NFV5 336 aaPredicted RBP18.57■□□□□ 0.56
NIF3L1-205ENST00000409588 PODXL2Q9NZ53 605 aa18.57■□□□□ 0.56
NIF3L1-205ENST00000409588 LAMB2P55268 1798 aa18.57■□□□□ 0.56
NIF3L1-205ENST00000409588 IGKV5-2P06315 115 aa18.56■□□□□ 0.56
NIF3L1-205ENST00000409588 PRKAR2AP13861 404 aaKnown RBP18.56■□□□□ 0.56
NIF3L1-205ENST00000409588 JMYQ8N9B5 988 aa18.56■□□□□ 0.56
NIF3L1-205ENST00000409588 CREBZFQ9NS37 354 aa18.56■□□□□ 0.56
NIF3L1-205ENST00000409588 SSUH2Q9Y2M2 353 aa18.56■□□□□ 0.56
NIF3L1-205ENST00000409588 NEURL1BA8MQ27 555 aa18.55■□□□□ 0.56
NIF3L1-205ENST00000409588 H7C1W4 665 aa18.55■□□□□ 0.56
NIF3L1-205ENST00000409588 CXCL9Q07325 125 aa18.55■□□□□ 0.56
NIF3L1-205ENST00000409588 FKBP5Q13451 457 aaPredicted RBP18.55■□□□□ 0.56
NIF3L1-205ENST00000409588 EAPPQ56P03 285 aaPredicted RBP18.55■□□□□ 0.56
NIF3L1-205ENST00000409588 CIAPIN1Q6FI81 312 aa18.55■□□□□ 0.56
NIF3L1-205ENST00000409588 LINS1Q8NG48 757 aa18.55■□□□□ 0.56
NIF3L1-205ENST00000409588 CDC5LQ99459 802 aaKnown RBP18.55■□□□□ 0.56
NIF3L1-205ENST00000409588 CACNA1FO60840 1977 aa18.55■□□□□ 0.56
NIF3L1-205ENST00000409588 DDX60Q8IY21 1712 aaKnown RBP18.54■□□□□ 0.56
NIF3L1-205ENST00000409588 G2E3Q7L622 706 aa18.54■□□□□ 0.56
NIF3L1-205ENST00000409588 DNAAF4Q8WXU2 420 aa18.54■□□□□ 0.56
NIF3L1-205ENST00000409588 ZNF428Q96B54 188 aa18.54■□□□□ 0.56
NIF3L1-205ENST00000409588 C6orf229H3BNL8 230 aa18.53■□□□□ 0.56
NIF3L1-205ENST00000409588 ITGBL1O95965 494 aaPredicted RBP18.53■□□□□ 0.56
NIF3L1-205ENST00000409588 SCNN1DP51172 638 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms