RNA–Protein interactions for RNA: ENST00000370022.9

PRPF38B-202, Transcript of pre-mRNA processing factor 38B, humanhuman

TSL 1 (best) BASIC

Gene PRPF38B, Length 1,591 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38B-202ENST00000370022 CHMP4BQ9H444 224 aaKnown RBP19.53■□□□□ 0.72
PRPF38B-202ENST00000370022 DDX19BQ9UMR2 479 aa19.53■□□□□ 0.72
PRPF38B-202ENST00000370022 DLEC1Q9Y238 1755 aa19.52■□□□□ 0.72
PRPF38B-202ENST00000370022 CENPBP07199 599 aaPredicted RBP19.52■□□□□ 0.71
PRPF38B-202ENST00000370022 MEIS3Q99687 375 aa19.52■□□□□ 0.71
PRPF38B-202ENST00000370022 COL11A2P13942 1736 aaPredicted RBP19.51■□□□□ 0.71
PRPF38B-202ENST00000370022 CSF1RP07333 972 aa19.51■□□□□ 0.71
PRPF38B-202ENST00000370022 DDX46Q7L014 1031 aaKnown RBP19.51■□□□□ 0.71
PRPF38B-202ENST00000370022 TTLL11Q8NHH1 800 aa19.51■□□□□ 0.71
PRPF38B-202ENST00000370022 ZNF622Q969S3 477 aaKnown RBP eCLIP19.51■□□□□ 0.713e-7■■■□□ 19.2
PRPF38B-202ENST00000370022 SUCLG2Q96I99 432 aa19.51■□□□□ 0.71
PRPF38B-202ENST00000370022 CRAMP1Q96RY5 1269 aa19.51■□□□□ 0.71
PRPF38B-202ENST00000370022 RTL9Q8NET4 1388 aa19.5■□□□□ 0.71
PRPF38B-202ENST00000370022 ZBTB7BO15156 539 aaPredicted RBP19.5■□□□□ 0.71
PRPF38B-202ENST00000370022 FOXO4P98177 505 aa19.5■□□□□ 0.71
PRPF38B-202ENST00000370022 TTLL6Q8N841 843 aa19.5■□□□□ 0.71
PRPF38B-202ENST00000370022 SUPT16HQ9Y5B9 1047 aaKnown RBP19.5■□□□□ 0.71
PRPF38B-202ENST00000370022 C20orf194Q5TEA3 1177 aa19.49■□□□□ 0.71
PRPF38B-202ENST00000370022 KAZALD1Q96I82 304 aa19.49■□□□□ 0.71
PRPF38B-202ENST00000370022 COG6Q9Y2V7 657 aa19.49■□□□□ 0.71
PRPF38B-202ENST00000370022 RABL6Q3YEC7 729 aaPredicted RBP19.49■□□□□ 0.71
PRPF38B-202ENST00000370022 DALRD3Q5D0E6 543 aaKnown RBP19.49■□□□□ 0.71
PRPF38B-202ENST00000370022 GNAI2P04899 355 aa19.48■□□□□ 0.71
PRPF38B-202ENST00000370022 MYH3P11055 1940 aa19.47■□□□□ 0.71
PRPF38B-202ENST00000370022 BBOX1O75936 387 aa19.47■□□□□ 0.71
PRPF38B-202ENST00000370022 GRAPQ13588 217 aa19.47■□□□□ 0.71
PRPF38B-202ENST00000370022 EPHA10Q5JZY3 1008 aa19.47■□□□□ 0.71
PRPF38B-202ENST00000370022 LMBR1LQ6UX01 489 aa19.47■□□□□ 0.71
PRPF38B-202ENST00000370022 GRAPLQ8TC17 118 aaPredicted RBP19.47■□□□□ 0.71
PRPF38B-202ENST00000370022 BICC1Q9H694 974 aaKnown RBP19.47■□□□□ 0.71
PRPF38B-202ENST00000370022 BRCA1P38398 1863 aaKnown RBP19.46■□□□□ 0.71
PRPF38B-202ENST00000370022 TMC4Q7Z404 712 aa19.46■□□□□ 0.71
PRPF38B-202ENST00000370022 GREM2Q9H772 168 aa19.46■□□□□ 0.71
PRPF38B-202ENST00000370022 LRRFIP2Q9Y608 721 aaKnown RBP19.46■□□□□ 0.71
PRPF38B-202ENST00000370022 PRPF40BQ6NWY9 871 aaKnown RBP19.45■□□□□ 0.7
PRPF38B-202ENST00000370022 CDC5LQ99459 802 aaKnown RBP19.45■□□□□ 0.7
PRPF38B-202ENST00000370022 ITGA6P23229 1130 aa19.44■□□□□ 0.7
PRPF38B-202ENST00000370022 IFIT5Q13325 482 aaKnown RBP19.44■□□□□ 0.7
PRPF38B-202ENST00000370022 CCDC57Q2TAC2 916 aa19.44■□□□□ 0.7
PRPF38B-202ENST00000370022 FAM161AQ3B820 660 aa19.44■□□□□ 0.7
PRPF38B-202ENST00000370022 ANKRD44Q8N8A2 993 aa19.44■□□□□ 0.7
PRPF38B-202ENST00000370022 CCDC85AQ96PX6 553 aaPredicted RBP19.44■□□□□ 0.7
PRPF38B-202ENST00000370022 BCS1LQ9Y276 419 aa19.44■□□□□ 0.7
PRPF38B-202ENST00000370022 CHMP3Q9Y3E7 222 aa19.44■□□□□ 0.7
PRPF38B-202ENST00000370022 ANKRD18BA2A2Z9 1011 aa19.44■□□□□ 0.7
PRPF38B-202ENST00000370022 SOGA3Q5TF21 947 aa19.44■□□□□ 0.7
PRPF38B-202ENST00000370022 PPEF1O14829 653 aaPredicted RBP19.43■□□□□ 0.7
PRPF38B-202ENST00000370022 RPS8P62241 208 aaKnown RBP19.43■□□□□ 0.7
PRPF38B-202ENST00000370022 ANKRD18AQ8IVF6 992 aa19.43■□□□□ 0.7
PRPF38B-202ENST00000370022 SEC31BQ9NQW1 1179 aa19.43■□□□□ 0.7
PRPF38B-202ENST00000370022 ZBTB40Q9NUA8 1239 aa19.43■□□□□ 0.7
PRPF38B-202ENST00000370022 DCAF8L1A6NGE4 600 aa19.42■□□□□ 0.7
PRPF38B-202ENST00000370022 MTX1Q13505 466 aa19.42■□□□□ 0.7
PRPF38B-202ENST00000370022 CC2D2BQ6DHV5 1058 aa19.42■□□□□ 0.7
PRPF38B-202ENST00000370022 CELF1Q92879 486 aaKnown RBP19.42■□□□□ 0.7
PRPF38B-202ENST00000370022 TMX4Q9H1E5 349 aaPredicted RBP19.42■□□□□ 0.7
PRPF38B-202ENST00000370022 IGHMBP2P38935 993 aaKnown RBP19.41■□□□□ 0.7
PRPF38B-202ENST00000370022 GPR162Q16538 588 aa19.41■□□□□ 0.7
PRPF38B-202ENST00000370022 GRIPAP1Q4V328 841 aa19.41■□□□□ 0.7
PRPF38B-202ENST00000370022 C7orf43Q8WVR3 580 aa19.41■□□□□ 0.7
PRPF38B-202ENST00000370022 WWC3Q9ULE0 1092 aa19.41■□□□□ 0.7
PRPF38B-202ENST00000370022 SP8Q8IXZ3 490 aa19.4■□□□□ 0.7
PRPF38B-202ENST00000370022 ATP6V0A2Q9Y487 856 aa19.4■□□□□ 0.7
PRPF38B-202ENST00000370022 GRIN3BO60391 1043 aa19.4■□□□□ 0.7
PRPF38B-202ENST00000370022 AAMPQ13685 434 aa19.4■□□□□ 0.7
PRPF38B-202ENST00000370022 TAF7LQ5H9L4 462 aa19.4■□□□□ 0.7
PRPF38B-202ENST00000370022 BSDC1Q9NW68 430 aaPredicted RBP19.4■□□□□ 0.7
PRPF38B-202ENST00000370022 SLX4Q8IY92 1834 aa19.39■□□□□ 0.7
PRPF38B-202ENST00000370022 ARFGEF1Q9Y6D6 1849 aa19.39■□□□□ 0.7
PRPF38B-202ENST00000370022 C21orf2O43822 256 aa19.39■□□□□ 0.69
PRPF38B-202ENST00000370022 YBX3P16989 372 aaKnown RBP eCLIP19.39■□□□□ 0.69
PRPF38B-202ENST00000370022 MPHOSPH8Q99549 860 aa19.39■□□□□ 0.69
PRPF38B-202ENST00000370022 SRGAP3O43295 1099 aa19.38■□□□□ 0.69
PRPF38B-202ENST00000370022 CCDC93Q567U6 631 aa19.38■□□□□ 0.69
PRPF38B-202ENST00000370022 CRBNQ96SW2 442 aa19.38■□□□□ 0.69
PRPF38B-202ENST00000370022 C1orf115Q9H7X2 142 aa19.38■□□□□ 0.69
PRPF38B-202ENST00000370022 ATP8B2P98198 1209 aa19.37■□□□□ 0.69
PRPF38B-202ENST00000370022 RPAP2Q8IXW5 612 aaPredicted RBP19.37■□□□□ 0.69
PRPF38B-202ENST00000370022 RTKN2Q8IZC4 609 aa19.37■□□□□ 0.69
PRPF38B-202ENST00000370022 CACNA1SQ13698 1873 aa19.37■□□□□ 0.69
PRPF38B-202ENST00000370022 RFX5P48382 616 aaPredicted RBP19.36■□□□□ 0.69
PRPF38B-202ENST00000370022 FBXO3Q9UK99 471 aa19.36■□□□□ 0.69
PRPF38B-202ENST00000370022 CEP85Q6P2H3 762 aa19.36■□□□□ 0.69
PRPF38B-202ENST00000370022 LDHAL6AQ6ZMR3 332 aa19.36■□□□□ 0.69
PRPF38B-202ENST00000370022 ZNF219Q9P2Y4 722 aaPredicted RBP19.36■□□□□ 0.69
PRPF38B-202ENST00000370022 COL4A1P02462 1669 aa19.36■□□□□ 0.69
PRPF38B-202ENST00000370022 COPRSQ9NQ92 184 aa19.35■□□□□ 0.69
PRPF38B-202ENST00000370022 LRRC37AA6NMS7 1700 aa19.34■□□□□ 0.69
PRPF38B-202ENST00000370022 TAF1P21675 1872 aa19.34■□□□□ 0.69
PRPF38B-202ENST00000370022 PNMA6EA0A0J9YXQ4 647 aa19.34■□□□□ 0.69
PRPF38B-202ENST00000370022 PTPN12Q05209 780 aaKnown RBP19.34■□□□□ 0.69
PRPF38B-202ENST00000370022 SSH3Q8TE77 659 aa19.34■□□□□ 0.69
PRPF38B-202ENST00000370022 ZNF594Q96JF6 807 aaPredicted RBP19.34■□□□□ 0.69
PRPF38B-202ENST00000370022 CNNM1Q9NRU3 951 aa19.34■□□□□ 0.69
PRPF38B-202ENST00000370022 MINPP1Q9UNW1 487 aa19.34■□□□□ 0.69
PRPF38B-202ENST00000370022 SNED1Q8TER0 1413 aa19.33■□□□□ 0.69
PRPF38B-202ENST00000370022 POLA2Q14181 598 aa19.33■□□□□ 0.69
PRPF38B-202ENST00000370022 ANKRD2Q9GZV1 360 aa19.33■□□□□ 0.69
PRPF38B-202ENST00000370022 PODXL2Q9NZ53 605 aa19.33■□□□□ 0.69
PRPF38B-202ENST00000370022 LTBP3Q9NS15 1303 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms