RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 CWC25Q9NXE8 425 aaPredicted RBP23.6■■□□□ 1.37
CLN3-202ENST00000355477 ZNF541Q9H0D2 1346 aa23.59■■□□□ 1.37
CLN3-202ENST00000355477 IGKV5-2P06315 115 aa23.59■■□□□ 1.37
CLN3-202ENST00000355477 FZD9O00144 591 aa23.58■■□□□ 1.37
CLN3-202ENST00000355477 PCCAP05165 728 aaPredicted RBP23.58■■□□□ 1.37
CLN3-202ENST00000355477 MYH16Q9H6N6 1097 aa23.58■■□□□ 1.37
CLN3-202ENST00000355477 SCN4AP35499 1836 aa23.57■■□□□ 1.36
CLN3-202ENST00000355477 LRRC37AA6NMS7 1700 aa23.57■■□□□ 1.36
CLN3-202ENST00000355477 FLIIQ13045 1269 aa23.57■■□□□ 1.36
CLN3-202ENST00000355477 CELF1Q92879 486 aaKnown RBP23.57■■□□□ 1.36
CLN3-202ENST00000355477 TMX4Q9H1E5 349 aaPredicted RBP23.57■■□□□ 1.36
CLN3-202ENST00000355477 FSTL1Q12841 308 aa23.56■■□□□ 1.36
CLN3-202ENST00000355477 JDP2Q8WYK2 163 aa23.56■■□□□ 1.36
CLN3-202ENST00000355477 MYH3P11055 1940 aa23.56■■□□□ 1.36
CLN3-202ENST00000355477 CWF19L2Q2TBE0 894 aaKnown RBP23.55■■□□□ 1.36
CLN3-202ENST00000355477 LARGE2Q8N3Y3 721 aa23.55■■□□□ 1.36
CLN3-202ENST00000355477 MPNDQ8N594 471 aa23.55■■□□□ 1.36
CLN3-202ENST00000355477 RTFDC1Q9BY42 306 aaPredicted RBP23.55■■□□□ 1.36
CLN3-202ENST00000355477 NEXNQ0ZGT2 675 aa23.54■■□□□ 1.36
CLN3-202ENST00000355477 DPP8Q6V1X1 898 aaPredicted RBP23.54■■□□□ 1.36
CLN3-202ENST00000355477 L3MBTL3Q96JM7 780 aaPredicted RBP23.54■■□□□ 1.36
CLN3-202ENST00000355477 NEURL1BA8MQ27 555 aa23.53■■□□□ 1.36
CLN3-202ENST00000355477 PDE8AO60658 829 aa23.53■■□□□ 1.36
CLN3-202ENST00000355477 FKBP5Q13451 457 aaPredicted RBP23.53■■□□□ 1.36
CLN3-202ENST00000355477 AOC3Q16853 763 aa23.53■■□□□ 1.36
CLN3-202ENST00000355477 SMC1BQ8NDV3 1235 aa23.53■■□□□ 1.36
CLN3-202ENST00000355477 SEC31BQ9NQW1 1179 aa23.53■■□□□ 1.36
CLN3-202ENST00000355477 DUOX1Q9NRD9 1551 aa23.52■■□□□ 1.36
CLN3-202ENST00000355477 CCER2I3L3R5 266 aa23.52■■□□□ 1.36
CLN3-202ENST00000355477 PPIP5K2O43314 1243 aa23.52■■□□□ 1.36
CLN3-202ENST00000355477 TMC4Q7Z404 712 aa23.52■■□□□ 1.36
CLN3-202ENST00000355477 CDHR2Q9BYE9 1310 aa23.52■■□□□ 1.36
CLN3-202ENST00000355477 HSP90B1P14625 803 aaKnown RBP23.51■■□□□ 1.35
CLN3-202ENST00000355477 RPS8P62241 208 aaKnown RBP23.51■■□□□ 1.35
CLN3-202ENST00000355477 CCDC85AQ96PX6 553 aaPredicted RBP23.51■■□□□ 1.35
CLN3-202ENST00000355477 POTEIP0CG38 1075 aa23.5■■□□□ 1.35
CLN3-202ENST00000355477 POTEJP0CG39 1038 aa23.5■■□□□ 1.35
CLN3-202ENST00000355477 APLP1P51693 650 aa23.5■■□□□ 1.35
CLN3-202ENST00000355477 GPC2Q8N158 579 aa23.5■■□□□ 1.35
CLN3-202ENST00000355477 SUPT20HQ8NEM7 779 aa23.5■■□□□ 1.35
CLN3-202ENST00000355477 DNAAF4Q8WXU2 420 aa23.5■■□□□ 1.35
CLN3-202ENST00000355477 VPS33BQ9H267 617 aa23.5■■□□□ 1.35
CLN3-202ENST00000355477 H7C1W4 665 aa23.49■■□□□ 1.35
CLN3-202ENST00000355477 EIF6P56537 245 aaKnown RBP23.49■■□□□ 1.35
CLN3-202ENST00000355477 CCDC152Q4G0S7 254 aa23.49■■□□□ 1.35
CLN3-202ENST00000355477 NIM1KQ8IY84 436 aa23.49■■□□□ 1.35
CLN3-202ENST00000355477 TAF1DQ9H5J8 278 aaPredicted RBP23.49■■□□□ 1.35
CLN3-202ENST00000355477 LTBP1Q14766 1721 aa23.49■■□□□ 1.35
CLN3-202ENST00000355477 SPEF2Q9C093 1822 aa23.48■■□□□ 1.35
CLN3-202ENST00000355477 IQCA1LA6NCM1 817 aa23.48■■□□□ 1.35
CLN3-202ENST00000355477 F6X3S4 739 aa23.48■■□□□ 1.35
CLN3-202ENST00000355477 GPSM2P81274 684 aa23.48■■□□□ 1.35
CLN3-202ENST00000355477 GCKRQ14397 625 aa23.48■■□□□ 1.35
CLN3-202ENST00000355477 GJA3Q9Y6H8 435 aa23.48■■□□□ 1.35
CLN3-202ENST00000355477 KIAA2012Q0VF49 1180 aa23.47■■□□□ 1.35
CLN3-202ENST00000355477 UBE3BQ7Z3V4 1068 aa23.47■■□□□ 1.35
CLN3-202ENST00000355477 NSFL1CQ9UNZ2 370 aaKnown RBP23.47■■□□□ 1.35
CLN3-202ENST00000355477 CTSWP56202 376 aa23.46■■□□□ 1.35
CLN3-202ENST00000355477 HTRA3P83110 453 aa23.46■■□□□ 1.35
CLN3-202ENST00000355477 LINS1Q8NG48 757 aa23.46■■□□□ 1.35
CLN3-202ENST00000355477 HACL1Q9UJ83 578 aa23.46■■□□□ 1.35
CLN3-202ENST00000355477 E9PSI1 815 aa23.45■■□□□ 1.34
CLN3-202ENST00000355477 SLFN5Q08AF3 891 aa23.45■■□□□ 1.34
CLN3-202ENST00000355477 TTLL11Q8NHH1 800 aa23.45■■□□□ 1.34
CLN3-202ENST00000355477 CDCA7LQ96GN5 454 aa23.45■■□□□ 1.34
CLN3-202ENST00000355477 POLLQ9UGP5 575 aa23.45■■□□□ 1.34
CLN3-202ENST00000355477 ZNRF3Q9ULT6 936 aa23.45■■□□□ 1.34
CLN3-202ENST00000355477 EPHX2P34913 555 aa23.44■■□□□ 1.34
CLN3-202ENST00000355477 CASP7P55210 303 aa23.44■■□□□ 1.34
CLN3-202ENST00000355477 DNAJC5GQ8N7S2 189 aa23.44■■□□□ 1.34
CLN3-202ENST00000355477 ADAMTSL1Q8N6G6 1762 aa23.43■■□□□ 1.34
CLN3-202ENST00000355477 CXCL9Q07325 125 aa23.43■■□□□ 1.34
CLN3-202ENST00000355477 CHADLQ6NUI6 762 aa23.43■■□□□ 1.34
CLN3-202ENST00000355477 GREM2Q9H772 168 aa23.43■■□□□ 1.34
CLN3-202ENST00000355477 C6orf229H3BNL8 230 aa23.42■■□□□ 1.34
CLN3-202ENST00000355477 WASHC4Q2M389 1173 aa23.42■■□□□ 1.34
CLN3-202ENST00000355477 EAPPQ56P03 285 aaPredicted RBP23.42■■□□□ 1.34
CLN3-202ENST00000355477 BEND3Q5T5X7 828 aa23.42■■□□□ 1.34
CLN3-202ENST00000355477 GPR101Q96P66 508 aaPredicted RBP23.42■■□□□ 1.34
CLN3-202ENST00000355477 YDJCA8MPS7 323 aa23.41■■□□□ 1.34
CLN3-202ENST00000355477 RIMBP2O15034 1052 aa23.41■■□□□ 1.34
CLN3-202ENST00000355477 SCNN1DP51172 638 aa23.41■■□□□ 1.34
CLN3-202ENST00000355477 LDHDQ86WU2 507 aa23.41■■□□□ 1.34
CLN3-202ENST00000355477 ANKRD18AQ8IVF6 992 aa23.41■■□□□ 1.34
CLN3-202ENST00000355477 TBC1D16Q8TBP0 767 aa23.41■■□□□ 1.34
CLN3-202ENST00000355477 PLA2G12BQ9BX93 195 aa23.41■■□□□ 1.34
CLN3-202ENST00000355477 EPS15P42566 896 aa23.4■■□□□ 1.34
CLN3-202ENST00000355477 PODXL2Q9NZ53 605 aa23.4■■□□□ 1.34
CLN3-202ENST00000355477 RTL9Q8NET4 1388 aa23.4■■□□□ 1.34
CLN3-202ENST00000355477 RAD17O75943 681 aa23.39■■□□□ 1.33
CLN3-202ENST00000355477 TRMT2AQ8IZ69 625 aaKnown RBP23.39■■□□□ 1.33
CLN3-202ENST00000355477 MRPL50Q8N5N7 158 aaKnown RBP23.39■■□□□ 1.33
CLN3-202ENST00000355477 MIER1Q8N108 512 aa23.38■■□□□ 1.33
CLN3-202ENST00000355477 CDC5LQ99459 802 aaKnown RBP23.38■■□□□ 1.33
CLN3-202ENST00000355477 DBNDD1Q9H9R9 158 aa23.38■■□□□ 1.33
CLN3-202ENST00000355477 ANKIB1Q9P2G1 1089 aa23.38■■□□□ 1.33
CLN3-202ENST00000355477 CLEC11AQ9Y240 323 aa23.38■■□□□ 1.33
CLN3-202ENST00000355477 SCN9AQ15858 1988 aa23.38■■□□□ 1.33
CLN3-202ENST00000355477 CSF1RP07333 972 aa23.37■■□□□ 1.33
CLN3-202ENST00000355477 LMOD1P29536 600 aaPredicted RBP23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms