RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 RAP1GDS1P52306 607 aa12.71□□□□□ -0.38
HDGFL3-201ENST00000299633 TNIP1Q15025 636 aa12.71□□□□□ -0.38
HDGFL3-201ENST00000299633 CERS3Q8IU89 383 aa12.71□□□□□ -0.38
HDGFL3-201ENST00000299633 ATP2A3Q93084 1043 aa12.71□□□□□ -0.38
HDGFL3-201ENST00000299633 TACC3Q9Y6A5 838 aa12.71□□□□□ -0.38
HDGFL3-201ENST00000299633 PDE3AQ14432 1141 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 ZSCAN23Q3MJ62 389 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 VPS52Q8N1B4 723 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 SURF6O75683 361 aaKnown RBP12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 ARHGAP24Q8N264 748 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 SPATS2LQ9NUQ6 558 aaKnown RBP12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 CDK13Q14004 1512 aaKnown RBP12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 ATP2A1O14983 1001 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 CTCFLQ8NI51 663 aaPredicted RBP12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 CCT6BQ92526 530 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 LIMCH1Q9UPQ0 1083 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 KIF20AO95235 890 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 GIMAP4Q9NUV9 329 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 CCDC14Q49A88 953 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 NCAPGQ9BPX3 1015 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 OPHN1O60890 802 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 LUC7L3O95232 432 aaKnown RBP12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 PEX19P40855 299 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 PDCD2Q16342 344 aaPredicted RBP12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 MCUR1Q96AQ8 359 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 CETN3O15182 167 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 SNX16P57768 344 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 CCDC40Q4G0X9 1142 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 OGFRQ9NZT2 677 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 CRCPO75575 148 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 CCDC92Q53HC0 331 aaPredicted RBP12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 MICAL1Q8TDZ2 1067 aa12.7□□□□□ -0.38
HDGFL3-201ENST00000299633 TXNDC9O14530 226 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 CCDC30Q5VVM6 783 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 PPP4R3AQ6IN85 833 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 PLEKHH1Q9ULM0 1364 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 RLBP1P12271 317 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 GNAI2P04899 355 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 ARHGAP25P42331 645 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 C20orf194Q5TEA3 1177 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 RGS22Q8NE09 1264 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 ARHGEF2Q92974 986 aaKnown RBP12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 ATP2A2P16615 1042 aaKnown RBP12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 ZNF131P52739 623 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 KLHDC4Q8TBB5 520 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 GTF3C6Q969F1 213 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 MUM1Q2TAK8 710 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 CKAP2LQ8IYA6 745 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 TTC16Q8NEE8 873 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 BICD1Q96G01 975 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 CTAGE15A4D2H0 777 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 CTAGE8P0CG41 777 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 CTAGE4Q8IX94 777 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 GCC1Q96CN9 775 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 ITSN2Q9NZM3 1697 aa12.69□□□□□ -0.38
HDGFL3-201ENST00000299633 TWISTNBQ3B726 338 aaPredicted RBP12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 PPP6R1Q9UPN7 881 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 PLEKHH2Q8IVE3 1493 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 PRPHP41219 470 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 PNISRQ8TF01 805 aaKnown RBP12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 SERPINI2O75830 405 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 CCDC65Q8IXS2 484 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 CHD1LQ86WJ1 897 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 GDPD2Q9HCC8 539 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 THEGQ9P2T0 379 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 NUCKS1Q9H1E3 243 aaKnown RBP12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 AFAP1L1Q8TED9 768 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 SPAG5Q96R06 1193 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 PHAXQ9H814 394 aaKnown RBP12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 FYB2Q5VWT5 728 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 DAPK1P53355 1430 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 ZNF76P36508 570 aa12.68□□□□□ -0.38
HDGFL3-201ENST00000299633 TDRD12Q587J7 1177 aaKnown RBP12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 MTIF2P46199 727 aaKnown RBP12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 KCNK9Q9NPC2 374 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 GNAI3P08754 354 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 GFAPP14136 432 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 TRIM60Q495X7 471 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 GSTA5Q7RTV2 222 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 USP37Q86T82 979 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 TBC1D5Q92609 795 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 SIL1Q9H173 461 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 SYNJ2O15056 1496 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 VIMP08670 466 aaKnown RBP12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 ABTB1Q969K4 478 aaPredicted RBP12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 SDCCAG8Q86SQ7 713 aaPredicted RBP12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 GNL3LQ9NVN8 582 aaKnown RBP12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 SYNCQ9H7C4 482 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 SEC63Q9UGP8 760 aaKnown RBP12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 HSPA1LP34931 641 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 SKOR1P84550 965 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 SCN8AQ9UQD0 1980 aa12.67□□□□□ -0.38
HDGFL3-201ENST00000299633 RASEFQ8IZ41 740 aa12.66□□□□□ -0.38
HDGFL3-201ENST00000299633 TXNDC16Q9P2K2 825 aa12.66□□□□□ -0.38
HDGFL3-201ENST00000299633 CEP104O60308 925 aa12.66□□□□□ -0.38
HDGFL3-201ENST00000299633 PALM3A6NDB9 673 aaPredicted RBP12.66□□□□□ -0.38
HDGFL3-201ENST00000299633 TRIM68Q6AZZ1 485 aa12.66□□□□□ -0.38
HDGFL3-201ENST00000299633 TMED1Q13445 227 aa12.66□□□□□ -0.38
HDGFL3-201ENST00000299633 MRPL46Q9H2W6 279 aaKnown RBP12.66□□□□□ -0.38
HDGFL3-201ENST00000299633 NKTRP30414 1462 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms