RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 ERCC6LQ2NKX8 1250 aa15.43■□□□□ 0.06
NUP54-201ENST00000264883 SYT10Q6XYQ8 523 aa15.43■□□□□ 0.06
NUP54-201ENST00000264883 KRBA2Q6ZNG9 492 aa15.43■□□□□ 0.06
NUP54-201ENST00000264883 SECISBP2LQ93073 1101 aaKnown RBP15.43■□□□□ 0.06
NUP54-201ENST00000264883 ZSCAN31Q96LW9 406 aaPredicted RBP15.43■□□□□ 0.06
NUP54-201ENST00000264883 GEMIN8Q9NWZ8 242 aaKnown RBP15.43■□□□□ 0.06
NUP54-201ENST00000264883 MTMR6Q9Y217 621 aa15.43■□□□□ 0.06
NUP54-201ENST00000264883 LRRFIP2Q9Y608 721 aaKnown RBP15.43■□□□□ 0.06
NUP54-201ENST00000264883 SKILP12757 684 aa15.42■□□□□ 0.06
NUP54-201ENST00000264883 LIG1P18858 919 aa15.42■□□□□ 0.06
NUP54-201ENST00000264883 POLA2Q14181 598 aa15.42■□□□□ 0.06
NUP54-201ENST00000264883 USP42Q9H9J4 1324 aaKnown RBP15.42■□□□□ 0.06
NUP54-201ENST00000264883 AK2P54819 239 aa15.42■□□□□ 0.06
NUP54-201ENST00000264883 NFATC2IPQ8NCF5 419 aa15.42■□□□□ 0.06
NUP54-201ENST00000264883 LARP6Q9BRS8 491 aaKnown RBP15.42■□□□□ 0.06
NUP54-201ENST00000264883 SH2B1Q9NRF2 756 aaPredicted RBP15.42■□□□□ 0.06
NUP54-201ENST00000264883 TRMT1Q9NXH9 659 aaKnown RBP15.42■□□□□ 0.06
NUP54-201ENST00000264883 SNX14Q9Y5W7 946 aa15.42■□□□□ 0.06
NUP54-201ENST00000264883 KIF2AO00139 706 aaPredicted RBP15.41■□□□□ 0.06
NUP54-201ENST00000264883 POLR3GO15318 223 aaPredicted RBP15.41■□□□□ 0.06
NUP54-201ENST00000264883 ARID5BQ14865 1188 aa15.41■□□□□ 0.06
NUP54-201ENST00000264883 KCNH5Q8NCM2 988 aa15.41■□□□□ 0.06
NUP54-201ENST00000264883 RUFY2Q8WXA3 655 aa15.41■□□□□ 0.06
NUP54-201ENST00000264883 DHX16O60231 1041 aaKnown RBP15.41■□□□□ 0.06
NUP54-201ENST00000264883 GJB2P29033 226 aa15.41■□□□□ 0.06
NUP54-201ENST00000264883 ZNF165P49910 485 aa15.41■□□□□ 0.06
NUP54-201ENST00000264883 UNC5CLQ8IV45 518 aa15.41■□□□□ 0.06
NUP54-201ENST00000264883 C10orf67Q8IYJ2 551 aa15.41■□□□□ 0.06
NUP54-201ENST00000264883 MIS18AQ9NYP9 233 aa15.41■□□□□ 0.06
NUP54-201ENST00000264883 TTC41PQ6P2S7 1318 aa15.4■□□□□ 0.06
NUP54-201ENST00000264883 GNAT3A8MTJ3 354 aa15.4■□□□□ 0.06
NUP54-201ENST00000264883 CTR9Q6PD62 1173 aa15.4■□□□□ 0.06
NUP54-201ENST00000264883 RUFY3Q7L099 469 aa15.4■□□□□ 0.06
NUP54-201ENST00000264883 TTC6Q86TZ1 520 aa15.4■□□□□ 0.06
NUP54-201ENST00000264883 CCAR2Q8N163 923 aaKnown RBP15.4■□□□□ 0.06
NUP54-201ENST00000264883 PI4K2BQ8TCG2 481 aa15.4■□□□□ 0.06
NUP54-201ENST00000264883 TM6SF1Q9BZW5 370 aa15.4■□□□□ 0.06
NUP54-201ENST00000264883 LSG1Q9H089 658 aaKnown RBP15.4■□□□□ 0.06
NUP54-201ENST00000264883 USP44Q9H0E7 712 aa15.4■□□□□ 0.06
NUP54-201ENST00000264883 PXDNQ92626 1479 aa15.4■□□□□ 0.06
NUP54-201ENST00000264883 VPS37CA5D8V6 355 aaPredicted RBP15.4■□□□□ 0.06
NUP54-201ENST00000264883 MYO1CO00159 1063 aa15.4■□□□□ 0.06
NUP54-201ENST00000264883 GTF2A1P52655 376 aaPredicted RBP15.4■□□□□ 0.06
NUP54-201ENST00000264883 CASQ1P31415 396 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 RHPN1Q8TCX5 695 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 DNAJC25Q9H1X3 360 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 DACT1Q9NYF0 836 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 NPHP3Q7Z494 1330 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 KRT85P78386 507 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 GPS2Q13227 327 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 VPS53Q5VIR6 699 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 IP6K1Q92551 441 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 EYA1Q99502 592 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 TMX1Q9H3N1 280 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 L2HGDHQ9H9P8 463 aa15.39■□□□□ 0.05
NUP54-201ENST00000264883 MED1Q15648 1581 aaPredicted RBP15.38■□□□□ 0.05
NUP54-201ENST00000264883 CCDC69A6NI79 296 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 TRIM66O15016 1216 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 GCP02774 474 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 CCZ1BP86790 482 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 CCZ1P86791 482 aaPredicted RBP15.38■□□□□ 0.05
NUP54-201ENST00000264883 TMCO3Q6UWJ1 677 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 CCDC191Q8NCU4 936 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 SMARCE1Q969G3 411 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 ARGLU1Q9NWB6 273 aaPredicted RBP15.38■□□□□ 0.05
NUP54-201ENST00000264883 CWC15Q9P013 229 aaKnown RBP15.38■□□□□ 0.05
NUP54-201ENST00000264883 ZRANB2O95218 330 aaKnown RBP eCLIP15.38■□□□□ 0.05
NUP54-201ENST00000264883 ST5P78524 1137 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 ZSCAN26Q16670 478 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 ARHGAP29Q52LW3 1261 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 FILIP1Q7Z7B0 1213 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 CCDC83Q8IWF9 413 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 KCNB2Q92953 911 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 CHMP4CQ96CF2 233 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 MRFAP1L1Q96HT8 127 aa15.38■□□□□ 0.05
NUP54-201ENST00000264883 DDX19AQ9NUU7 478 aaKnown RBP15.38■□□□□ 0.05
NUP54-201ENST00000264883 ELP1O95163 1332 aa15.37■□□□□ 0.05
NUP54-201ENST00000264883 GOLGA6L4A6NEF3 574 aa15.37■□□□□ 0.05
NUP54-201ENST00000264883 GOLGA6L19H0YKK7 550 aa15.37■□□□□ 0.05
NUP54-201ENST00000264883 SURF6O75683 361 aaKnown RBP15.37■□□□□ 0.05
NUP54-201ENST00000264883 GLRX3O76003 335 aaKnown RBP15.37■□□□□ 0.05
NUP54-201ENST00000264883 HOXB7P09629 217 aa15.37■□□□□ 0.05
NUP54-201ENST00000264883 TAF7Q15545 349 aaPredicted RBP15.37■□□□□ 0.05
NUP54-201ENST00000264883 RBM43Q6ZSC3 357 aaKnown RBP15.37■□□□□ 0.05
NUP54-201ENST00000264883 ARHGEF25Q86VW2 580 aa15.37■□□□□ 0.05
NUP54-201ENST00000264883 DDX17Q92841 729 aaKnown RBP15.37■□□□□ 0.05
NUP54-201ENST00000264883 IL25Q9H293 177 aa15.37■□□□□ 0.05
NUP54-201ENST00000264883 KCND1Q9NSA2 647 aa15.37■□□□□ 0.05
NUP54-201ENST00000264883 SNW1Q13573 536 aaKnown RBP15.36■□□□□ 0.05
NUP54-201ENST00000264883 SARM1Q6SZW1 724 aa15.36■□□□□ 0.05
NUP54-201ENST00000264883 BRINP3Q76B58 766 aa15.36■□□□□ 0.05
NUP54-201ENST00000264883 LRRN4CLQ8ND94 238 aa15.36■□□□□ 0.05
NUP54-201ENST00000264883 CLSTN2Q9H4D0 955 aa15.36■□□□□ 0.05
NUP54-201ENST00000264883 LCMT1Q9UIC8 334 aa15.36■□□□□ 0.05
NUP54-201ENST00000264883 DTNBO60941 627 aa15.36■□□□□ 0.05
NUP54-201ENST00000264883 LARGE1O95461 756 aa15.36■□□□□ 0.05
NUP54-201ENST00000264883 ICE2Q659A1 982 aa15.36■□□□□ 0.05
NUP54-201ENST00000264883 PPP1R42Q7Z4L9 355 aa15.36■□□□□ 0.05
NUP54-201ENST00000264883 HDAC5Q9UQL6 1122 aa15.36■□□□□ 0.05
NUP54-201ENST00000264883 TNS3Q68CZ2 1445 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 245 ms