RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 PYCARDQ9ULZ3 195 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 TMCO3Q6UWJ1 677 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 LINS1Q8NG48 757 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 IFNKQ9P0W0 207 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 MADDQ8WXG6 1647 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 ZSCAN25Q6NSZ9 544 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 LMBR1LQ6UX01 489 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 SLC27A2O14975 620 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 MCMDC2Q4G0Z9 681 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 NACAP1Q9BZK3 213 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 HMG20BQ9P0W2 317 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 TFCP2Q12800 502 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 TMEM67Q5HYA8 995 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 ANKRD13DQ6ZTN6 518 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 MPHOSPH8Q99549 860 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 CWC25Q9NXE8 425 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-201ENST00000249837 MARCKSP29966 332 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-201ENST00000249837 SSRP1Q08945 709 aaKnown RBP5.36□□□□□ -1.55
VPS13C-201ENST00000249837 SMARCE1Q969G3 411 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 NOL10Q9BSC4 688 aaKnown RBP5.36□□□□□ -1.55
VPS13C-201ENST00000249837 NSFL1CQ9UNZ2 370 aaKnown RBP5.36□□□□□ -1.55
VPS13C-201ENST00000249837 RASEFQ8IZ41 740 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 EDC4Q6P2E9 1401 aaKnown RBP5.36□□□□□ -1.55
VPS13C-201ENST00000249837 RPS6KB1P23443 525 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 GTF2F1P35269 517 aaKnown RBP eCLIP5.36□□□□□ -1.555e-10■■■■□ 19.5
VPS13C-201ENST00000249837 SYKP43405 635 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 ABCF2Q9UG63 623 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 DNAI1Q9UI46 699 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 NBPF7P0C2Y1 421 aaPredicted RBP5.36□□□□□ -1.55
VPS13C-201ENST00000249837 TIMM10P62072 90 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 AK7Q96M32 723 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 UBAC1Q9BSL1 405 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 USP44Q9H0E7 712 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 A0A087WWV3 80 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 CDC37L1Q7L3B6 337 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 FLT4P35916 1363 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 PTPDC1A2A3K4 754 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 HSPA4P34932 840 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 TXLNAP40222 546 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 MAGEC2Q9UBF1 373 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 AXDND1Q5T1B0 1012 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 MYRIPQ8NFW9 859 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 MRPS27Q92552 414 aaKnown RBP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 TTC41PQ6P2S7 1318 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 CAVIN2O95810 425 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 NAPBQ9H115 298 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 SHROOM2Q13796 1616 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 ABCA6Q8N139 1617 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 IFIT5Q13325 482 aaKnown RBP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 MYOM2P54296 1465 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 ZSCAN12O43309 604 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 ZFP91Q96JP5 570 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 ZSCAN16Q9H4T2 348 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 KIF24Q5T7B8 1368 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 KRT28Q7Z3Y7 464 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 BRMS1Q9HCU9 246 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 A0A1B0GVL5 298 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 SSBP05455 408 aaKnown RBP eCLIP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 U2AF2P26368 475 aaKnown RBP eCLIP5.35□□□□□ -1.558e-7■■■□□ 15.9
VPS13C-201ENST00000249837 CASQ1P31415 396 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 CNNM3Q8NE01 707 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 LEO1Q8WVC0 666 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 AIDAQ96BJ3 306 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 MAP2P11137 1827 aaKnown RBP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 HMGB1P09429 215 aaKnown RBP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 PHF23Q9BUL5 403 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 LRP2BPQ9P2M1 347 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 ZMYM3Q14202 1370 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 RUFY1Q96T51 708 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 CLSTN2Q9H4D0 955 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 GNG11P61952 73 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 DBNDD2Q9BQY9 259 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 ALG1Q9BT22 464 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 NCOA5Q9HCD5 579 aaKnown RBP5.35□□□□□ -1.55
VPS13C-201ENST00000249837 AOX1Q06278 1338 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 CEP152O94986 1710 aa5.35□□□□□ -1.55
VPS13C-201ENST00000249837 GOLGA8AA7E2F4 631 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 ZNF213O14771 459 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 SUCLG2Q96I99 432 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 ZNHIT6Q9NWK9 470 aaKnown RBP5.34□□□□□ -1.55
VPS13C-201ENST00000249837 KIF4BQ2VIQ3 1234 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 BCL2L12Q9HB09 334 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 NPHP3Q7Z494 1330 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 SNRPA1P09661 255 aaKnown RBP5.34□□□□□ -1.55
VPS13C-201ENST00000249837 CWC15Q9P013 229 aaKnown RBP5.34□□□□□ -1.55
VPS13C-201ENST00000249837 SLU7O95391 586 aaKnown RBP5.34□□□□□ -1.55
VPS13C-201ENST00000249837 GSDMDP57764 484 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 LRMPQ12912 555 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 ME3Q16798 604 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 NFATC2IPQ8NCF5 419 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 ZNF594Q96JF6 807 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-201ENST00000249837 SLC26A6Q9BXS9 759 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 STAP2Q9UGK3 403 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 ZDHHC9Q9Y397 364 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 EPB41L2O43491 1005 aaKnown RBP5.34□□□□□ -1.55
VPS13C-201ENST00000249837 TERF1P54274 439 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 SAMD1Q6SPF0 538 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-201ENST00000249837 PAXBP1Q9Y5B6 917 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 G3V3G9 751 aa5.34□□□□□ -1.55
VPS13C-201ENST00000249837 PRC1O43663 620 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms