RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 ANKRD61A6NGH8 418 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 TBX19O60806 448 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 TBX6O95947 436 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 IL5P05113 134 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 UBBP0CG47 229 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 UBCP0CG48 685 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 PRMT2P55345 433 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 RPS27AP62979 156 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 UBA52P62987 128 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 MAT1AQ00266 395 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 LTB4RQ15722 352 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 AKIRIN2Q53H80 203 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 ZC3H14Q6PJT7 736 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 OVCH1Q7RTY7 1134 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 CBLN2Q8IUK8 224 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 SDR9C7Q8NEX9 313 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 OR52E2Q8NGJ4 325 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 OR4K13Q8NH42 304 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 BPIFA2Q96DR5 249 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 CNRIP1Q96F85 164 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 ADAT1Q9BUB4 502 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 MBD2Q9UBB5 411 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 AQP8O94778 261 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 VSIG10L2P0DP72 767 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 CTGFP29279 349 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 RAB13P51153 203 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 UBE2IP63279 158 aaKnown RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 TAF13Q15543 124 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 PABPC1L2AQ5JQF8 200 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 TMEM150AQ86TG1 271 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 TMPRSS12Q86WS5 348 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 MUC20Q8N307 709 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 CDS1Q92903 461 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 KISS1RQ969F8 398 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 PELI1Q96FA3 418 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 SCLYQ96I15 445 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 GAL3ST1Q99999 423 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 ZDHHC5Q9C0B5 715 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 LHX9Q9NQ69 397 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 MED31Q9Y3C7 131 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 ATG4BQ9Y4P1 393 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 USP34Q70CQ2 3546 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 TRAPPC13A5PLN9 417 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 FAM25EA8MYX2 175 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 GNB5O14775 395 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 GREM1O60565 184 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 THY1P04216 161 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 PRKAR1BP31321 381 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 FRKP42685 505 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 MEOX2P50222 304 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 PSMD4P55036 377 aaKnown RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 TMCO2Q7Z6W1 182 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 ASPGQ86U10 573 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 NPAS4Q8IUM7 802 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 SVBPQ8N300 66 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 LNX2Q8N448 690 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 TMIEQ8NEW7 156 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 THAP6Q8TBB0 222 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 NANPQ8TBE9 248 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 TRMT2BQ96GJ1 504 aaKnown RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 A0A1B0GVT2 93 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 A0A1W2PRU2 124 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 CYBAP13498 195 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 TYRP1P17643 537 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 ITPKBP27987 946 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 TAS2R20P59543 309 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 ACTA2P62736 377 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 ACTG2P63267 376 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 BLOC1S1P78537 153 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 HYAL4Q2M3T9 481 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 YOD1Q5VVQ6 348 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 LIN54Q6MZP7 749 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 FAM199XQ6PEV8 388 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 C12orf45Q8N5I9 185 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 TEX19Q8NA77 164 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 PCSK9Q8NBP7 692 aaKnown RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 KCT2Q8NC54 265 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 SLC16A11Q8NCK7 471 aa11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 ARID1BQ8NFD5 2236 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-209ENST00000540469 NPIPA5A0A0B4J1W7 369 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 NPIPA7E9PJI5 369 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 MAN2B1O00754 1011 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 BHLHE40O14503 412 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 SGCEO43556 437 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 LCMT2O60294 686 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 ANXA2P07355 339 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 NPIPA8P0DM63 369 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 RPL4P36578 427 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 DUSP2Q05923 314 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 EID2Q8N6I1 236 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 SLC25A38Q96DW6 304 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 CNN2Q99439 309 aaKnown RBP11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 RHBGQ9H310 441 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 KLHL31Q9H511 634 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 PELI2Q9HAT8 420 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 IL36AQ9UHA7 158 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 DPP7Q9UHL4 492 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 ST6GALNAC2Q9UJ37 374 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 TO15178 435 aa11.84□□□□□ -0.51
SFSWAP-209ENST00000540469 CBR1P16152 277 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms