RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PON3Q15166 354 aa26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 SF3B4Q15427 424 aaKnown RBP eCLIP26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 TTC33Q6PID6 262 aaPredicted RBP26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 C5orf46Q6UWT4 87 aa26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 ADGRE4PQ86SQ3 457 aa26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 SLCO4A1Q96BD0 722 aa26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 PTDSS2Q9BVG9 487 aa26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 TIGARQ9NQ88 270 aa26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 CLCF1Q9UBD9 225 aa26.55■■□□□ 1.84
LIMCH1-211ENST00000509638 PMS2P2O95744 297 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 HOXB6P17509 224 aaKnown RBP26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 RPS5P46782 204 aaKnown RBP26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 UGT2B15P54855 530 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 CSNK2A1P68400 391 aaPredicted RBP26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 FGD3Q5JSP0 725 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 B3GNT6Q6ZMB0 384 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 TMEM239Q8WW34 195 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 CPNE4Q96A23 557 aaPredicted RBP26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 DHRS1Q96LJ7 313 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 EPYCQ99645 322 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 TRAV36DV7A0A075B6V5 113 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 A0A1W2PRQ8 180 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 HOXD4P09016 255 aaPredicted RBP26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 RRM2P31350 389 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 RAC3P60763 192 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 DGCR6Q14129 220 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 ZNF239Q16600 458 aaKnown RBP26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 NSUN5P2Q63ZY6 315 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 FNDC9Q8TBE3 224 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 SLC19A3Q9BZV2 496 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 ANKRD19PQ9H560 264 aa26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 CCM2LQ9NUG4 571 aaPredicted RBP26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 MCTS1Q9ULC4 181 aaKnown RBP26.54■■□□□ 1.84
LIMCH1-211ENST00000509638 MED12LQ86YW9 2145 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 MYO7BQ6PIF6 2116 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 LIPT2A6NK58 231 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 SLC22A20A6NK97 555 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 FKBP6O75344 327 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 OR2B6P58173 313 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 OR7A5Q15622 319 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 OR52J3Q8NH60 311 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 PFN4Q8NHR9 129 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 TAAR8Q969N4 342 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 DENND2DQ9H6A0 471 aaPredicted RBP26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 TRAPPC4Q9Y296 219 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 ZNF175Q9Y473 711 aa26.53■■□□□ 1.84
LIMCH1-211ENST00000509638 CD8B2A6NJW9 211 aa26.52■■□□□ 1.84
LIMCH1-211ENST00000509638 SYNGR4O95473 234 aa26.52■■□□□ 1.84
LIMCH1-211ENST00000509638 FAM69AQ5T7M9 428 aa26.52■■□□□ 1.84
LIMCH1-211ENST00000509638 FJX1Q86VR8 437 aa26.52■■□□□ 1.84
LIMCH1-211ENST00000509638 SLC7A13Q8TCU3 470 aa26.52■■□□□ 1.84
LIMCH1-211ENST00000509638 TAPBPLQ9BX59 468 aa26.52■■□□□ 1.84
LIMCH1-211ENST00000509638 MEPEQ9NQ76 525 aaPredicted RBP26.52■■□□□ 1.84
LIMCH1-211ENST00000509638 MEMO1Q9Y316 297 aa26.52■■□□□ 1.84
LIMCH1-211ENST00000509638 DIDO1Q9BTC0 2240 aaKnown RBP26.52■■□□□ 1.84
LIMCH1-211ENST00000509638 IGHV3-15A0A0B4J1V0 119 aa26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 E9PLN8 166 aa26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 GADD45GO95257 159 aa26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 TGM6O95932 706 aa26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 NCCRP1Q6ZVX7 275 aaPredicted RBP26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 PAPD5Q8NDF8 572 aaKnown RBP26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 ACOT11Q8WXI4 607 aaPredicted RBP26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 HS6ST2Q96MM7 605 aa26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 UCN2Q96RP3 112 aa26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 VKORC1Q9BQB6 163 aa26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 YY1AP1Q9H869 796 aa26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 CALHM2Q9HA72 323 aa26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 MED31Q9Y3C7 131 aa26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 PCNX1Q96RV3 2341 aa26.51■■□□□ 1.83
LIMCH1-211ENST00000509638 TRBV4-1A0A0J9YWV2 114 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 CCL21O00585 134 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 DNPH1O43598 174 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 PIP5K1CO60331 668 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 KLK2P20151 261 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 FPR1P21462 350 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 SMIM11AP58511 58 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 SLC35A1P78382 337 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 OR2T5Q6IEZ7 315 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 ZNF730Q6ZMV8 503 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 SEM1Q6ZVN7 128 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 MARVELD2Q8N4S9 558 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 OR2T29Q8NH02 315 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 SLC25A36Q96CQ1 311 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 TTYH2Q9BSA4 534 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 A0A087WUU8 490 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 ENO4A6NNW6 628 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 FTCDNL1E5RQL4 147 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 OR2T1O43869 369 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 FCGR2AP12318 317 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 LSM11P83369 360 aaKnown RBP eCLIP26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 PODNL1Q6PEZ8 512 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 P4HA3Q7Z4N8 544 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 C10orf53Q8N6V4 93 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 MFSD8Q8NHS3 518 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 ROBO4Q8WZ75 1007 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 ZHX1-C8orf76Q96EF9 292 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 DMRTA2Q96SC8 542 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 PRRG4Q9BZD6 226 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 KLHL4Q9C0H6 718 aa26.5■■□□□ 1.83
LIMCH1-211ENST00000509638 HELZ2Q9BYK8 2649 aaKnown RBP26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms