RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 SPAG4Q9NPE6 437 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 BATF3Q9NR55 127 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 ELOVL5Q9NYP7 299 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 SELENONQ9NZV5 590 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 EMC3Q9P0I2 261 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 PROCRQ9UNN8 238 aa10.59□□□□□ -0.71
VPS52-213ENST00000461743 IGKV3D-15A0A087WSY6 115 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 A0A0B4J2E0 115 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 A0A1B0GX12 115 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 ELOA3DA6NLF2 546 aaPredicted RBP10.58□□□□□ -0.72
VPS52-213ENST00000461743 ZNF724A8MTY0 619 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 A8MXE2 369 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 NME4O00746 187 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 TPST1O60507 370 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 NPIPB7O75200 414 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 GCM2O75603 506 aaPredicted RBP10.58□□□□□ -0.72
VPS52-213ENST00000461743 CGAP01215 116 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 OPN1SWP03999 348 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 GPIP06744 558 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 HTR2AP28223 471 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 SSTR2P30874 369 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 UQCRC1P31930 480 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 SLC16A1P53985 500 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 SIRPAP78324 504 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 KRT72Q14CN4 511 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 ELOA3BQ3SY89 546 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 SPATS1Q496A3 300 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 ALG10BQ5I7T1 473 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 ZNF787Q6DD87 383 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 ZNF613Q6PF04 617 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 PAQR6Q6TCH4 344 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 STK32CQ86UX6 486 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 COMTD1Q86VU5 262 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 SMYD1Q8NB12 490 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 CCDC197Q8NCU1 140 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 ELOA3Q8NG57 546 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 GPR32P1Q8NGA4 272 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 ABHD3Q8WU67 409 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 PROX1Q92786 737 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 SLC47A1Q96FL8 570 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 ARL5BQ96KC2 179 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 PSD2Q9BQI7 771 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 NAA11Q9BSU3 229 aaPredicted RBP10.58□□□□□ -0.72
VPS52-213ENST00000461743 RSPO3Q9BXY4 272 aaPredicted RBP10.58□□□□□ -0.72
VPS52-213ENST00000461743 OR11A1Q9GZK7 315 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 PIF1Q9H611 641 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 PLSCR4Q9NRQ2 329 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 CMTM6Q9NX76 183 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 GALNT8Q9NY28 637 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 TAGLN3Q9UI15 199 aa10.58□□□□□ -0.72
VPS52-213ENST00000461743 FBN2P35556 2912 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 NOTCH2Q04721 2471 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 A0A1B0GWA3 101 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 LIPT2A6NK58 231 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 CCT8L1PA6NM43 557 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 GPR171O14626 319 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 CHP2O43745 196 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 OR2T1O43869 369 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 MGRN1O60291 552 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 SMNDC1O75940 238 aaKnown RBP eCLIP10.57□□□□□ -0.72
VPS52-213ENST00000461743 AHSA1O95433 338 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 YES1P07947 543 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 CPOXP36551 454 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 CRYBA2P53672 197 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 PSME3P61289 254 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 H3F3AP84243 136 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 LIPEQ05469 1076 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 RASGEF1BQ0VAM2 473 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 RIPK1Q13546 671 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 MFSD13AQ14CX5 517 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 DUSP7Q16829 419 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 C1orf140Q5VVS0 124 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 BEND4Q6ZU67 534 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 BTLAQ7Z6A9 289 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 LUZP2Q86TE4 346 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 PGAM4Q8N0Y7 254 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 OR6S1Q8NH40 331 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 ROBO4Q8WZ75 1007 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 LZICQ8WZA0 190 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 SLC38A4Q969I6 547 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 RSRC1Q96IZ7 334 aaKnown RBP10.57□□□□□ -0.72
VPS52-213ENST00000461743 EPYCQ99645 322 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 TAPBPLQ9BX59 468 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 OR10A4Q9H209 315 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 ABCA4P78363 2273 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 TEX15Q9BXT5 2789 aa10.57□□□□□ -0.72
VPS52-213ENST00000461743 A0A087WUJ7 227 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 ZC3H12DA2A288 527 aaKnown RBP10.56□□□□□ -0.72
VPS52-213ENST00000461743 M0R3H8 397 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 VAMP5O95183 116 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 CNOT4O95628 575 aaKnown RBP10.56□□□□□ -0.72
VPS52-213ENST00000461743 IMPDH2P12268 514 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 KDELR2P33947 212 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 CD79BP40259 229 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 GSK3BP49841 420 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 OR2B6P58173 313 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 OR1Q1Q15612 314 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 LRRC23Q53EV4 343 aaPredicted RBP10.56□□□□□ -0.72
VPS52-213ENST00000461743 FAM69AQ5T7M9 428 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 HIST2H2BCQ6DN03 193 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms