RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 HAGHLQ6PII5 290 aaPredicted RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 NXPE4Q6UWF7 544 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 C17orf107Q6ZR85 190 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 FAM122BQ7Z309 247 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ZBTB2Q8N680 514 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 NETO2Q8NC67 525 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 C1orf162Q8NEQ5 155 aaPredicted RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 MDGA1Q8NFP4 955 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CADM4Q8NFZ8 388 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 OR4K2Q8NGD2 314 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 EEF1AKMT1Q8WVE0 214 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CPNE4Q96A23 557 aaPredicted RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 TMEM68Q96MH6 324 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ALX4Q9H161 411 aaPredicted RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 METTL17Q9H7H0 456 aaPredicted RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 SLC6A20Q9NP91 592 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 EXOSC3Q9NQT5 275 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 UPK3BL1B0FP48 263 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 UPK3BL2E5RIL1 263 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SGCEO43556 437 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 EIF4E2O60573 245 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 EIF3GO75821 320 aaKnown RBP eCLIP4.87□□□□□ -1.63
USP28-213ENST00000544967 PTBP3O95758 552 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 CBX7O95931 251 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 GASTP01350 101 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 APOC3P02656 99 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 GP1BAP07359 652 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 PSMB1P20618 241 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 SSTR2P30874 369 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SMSP52788 366 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 MVDP53602 400 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 MAZP56270 477 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 CTBP2P56545 445 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 VSX2P58304 361 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 MAT1AQ00266 395 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 SEMG2Q02383 582 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 RPL6Q02878 288 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 SNTB1Q13884 538 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 ZNF234Q14588 700 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 MAPK14Q16539 360 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 UAP1L1Q3KQV9 507 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 ZNF660Q6AZW8 331 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 TRIM40Q6P9F5 258 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 ATRAIDQ6UW56 229 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 LYPD4Q6UWN0 246 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 DNM1P46Q6ZS02 220 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 KANSL1Q7Z3B3 1105 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 MARCH9Q86YJ5 346 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 C1orf210Q8IVY1 113 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SFTPA1Q8IWL2 248 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 KLHL36Q8N4N3 616 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 C15orf54Q8N8G6 183 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SPPL2AQ8TCT8 520 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 CNOT9Q92600 299 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 GTF3AQ92664 365 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 TPD52L3Q96J77 140 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 OCSTAMPQ9BR26 566 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 MS4A7Q9GZW8 240 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 ENKD1Q9H0I2 346 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SLC32A1Q9H598 525 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 WDR26Q9H7D7 661 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 TUBA4BQ9H853 241 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 TREM2Q9NZC2 230 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 GULP1Q9UBP9 304 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 FBXL2Q9UKC9 423 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 PPIEQ9UNP9 301 aaKnown RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 DLGAP4Q9Y2H0 992 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 TMEM131Q92545 1883 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 ADAMTS20P59510 1910 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 TRAV20A0A0B4J274 112 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 RNF222A6NCQ9 220 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 OR51F1A6NGY5 319 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SCAMP1O15126 338 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 LATO43561 262 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 CREBL2O60519 120 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 FZD7O75084 574 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 NUDT7P0C024 238 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SP9P0CG40 484 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 RAB3BP20337 219 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 CNR1P21554 472 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 P2RY2P41231 377 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 CDKN3Q16667 212 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 PLA2G2CQ5R387 149 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 GPRC6AQ5T6X5 926 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 NOXRED1Q6NXP6 359 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 NUDT18Q6ZVK8 323 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 UBE2R2Q712K3 238 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 LDB1Q86U70 411 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 ANGPTL5Q86XS5 388 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 APCDD1Q8J025 514 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 OR9Q2Q8NGE9 314 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 TFGQ92734 400 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 MALSU1Q96EH3 234 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 PPP1R16AQ96I34 528 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 DDOQ99489 341 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SEC11CQ9BY50 192 aa4.87□□□□□ -1.63
USP28-213ENST00000544967 SPRTNQ9H040 489 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 DUSP15Q9H1R2 295 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 MYOZ1Q9NP98 299 aaPredicted RBP4.87□□□□□ -1.63
USP28-213ENST00000544967 NT5MQ9NPB1 228 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms