RNA–Protein interactions for RNA: ENST00000447267.4

SDCBP-205, Transcript of syndecan binding protein, humanhuman

TSL 3 BASIC

Gene SDCBP, Length 772 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-205ENST00000447267 ARPC4P59998 168 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 RPL15P61313 204 aaKnown RBP4.09□□□□□ -1.75
SDCBP-205ENST00000447267 HERVK_113P63132 956 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 ERVK-8P63133 956 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 SKP1P63208 163 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 RPP38P78345 283 aaKnown RBP4.09□□□□□ -1.75
SDCBP-205ENST00000447267 CTBP1Q13363 440 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 GBX1Q14549 363 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 ZNF267Q14586 743 aaPredicted RBP4.09□□□□□ -1.75
SDCBP-205ENST00000447267 EBPQ15125 230 aaKnown RBP4.09□□□□□ -1.75
SDCBP-205ENST00000447267 TBRG1Q3YBR2 411 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 FAM153CQ494X1 144 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 ANKRD20A4Q4UJ75 823 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 ANKRD20A2Q5SQ80 823 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 SH2D4BQ5SQS7 431 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 ANKRD20A1Q5TYW2 823 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 ANKRD20A3Q5VUR7 823 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 DHRS7BQ6IAN0 325 aaPredicted RBP4.09□□□□□ -1.75
SDCBP-205ENST00000447267 NIPAL1Q6NVV3 410 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 PIWIL4Q7Z3Z4 852 aaKnown RBP4.09□□□□□ -1.75
SDCBP-205ENST00000447267 NANOGNBQ7Z5D8 188 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 WDR75Q8IWA0 830 aaKnown RBP4.09□□□□□ -1.75
SDCBP-205ENST00000447267 ZNF595Q8IYB9 648 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 TMEM86BQ8N661 226 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 NIPA2Q8N8Q9 360 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 TRIM58Q8NG06 486 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 OR8K1Q8NGG5 319 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 SUN5Q8TC36 379 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 NT5CQ8TCD5 201 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 CKAP2Q8WWK9 683 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 CDKN2AIPNLQ96HQ2 116 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 NAP1L3Q99457 506 aaPredicted RBP4.09□□□□□ -1.75
SDCBP-205ENST00000447267 AGPAT1Q99943 283 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 HAUS8Q9BT25 410 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 SYT11Q9BT88 431 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 CARD6Q9BX69 1037 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 ERVK-6Q9BXR3 956 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 PARD6BQ9BYG5 372 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 FAM129AQ9BZQ8 928 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 DDX47Q9H0S4 455 aaKnown RBP4.09□□□□□ -1.75
SDCBP-205ENST00000447267 MYLK2Q9H1R3 596 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 VCX3BQ9H321 246 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 DSN1Q9H410 356 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 INPP5EQ9NRR6 644 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 GLRX2Q9NS18 164 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 NLE1Q9NVX2 485 aaPredicted RBP4.09□□□□□ -1.75
SDCBP-205ENST00000447267 SH3BP4Q9P0V3 963 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 MCTS1Q9ULC4 181 aaKnown RBP4.09□□□□□ -1.75
SDCBP-205ENST00000447267 ERVK-19Q9WJR5 959 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 PRELID1Q9Y255 219 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 HEY1Q9Y5J3 304 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 INSIG2Q9Y5U4 225 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 POMT1Q9Y6A1 747 aa4.09□□□□□ -1.75
SDCBP-205ENST00000447267 RNF213Q63HN8 5207 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 LSM1O15116 133 aaKnown RBP4.08□□□□□ -1.76
SDCBP-205ENST00000447267 PSIP1O75475 530 aaKnown RBP4.08□□□□□ -1.76
SDCBP-205ENST00000447267 SYF2O95926 243 aaKnown RBP4.08□□□□□ -1.76
SDCBP-205ENST00000447267 ZNF12P17014 697 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 EEF1GP26641 437 aaKnown RBP4.08□□□□□ -1.76
SDCBP-205ENST00000447267 RAD52P43351 418 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 EFNB2P52799 333 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 HMGCS1Q01581 520 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 ROR2Q01974 943 aaKnown RBP4.08□□□□□ -1.76
SDCBP-205ENST00000447267 RGS1Q08116 209 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 LARS2Q15031 903 aaKnown RBP4.08□□□□□ -1.76
SDCBP-205ENST00000447267 TMED2Q15363 201 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 TAF11Q15544 211 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 NNATQ16517 81 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 SLC9B1Q4ZJI4 515 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 SLC9A4Q6AI14 798 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 ATL3Q6DD88 541 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 TMEM81Q6P7N7 255 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 MFSD7Q6UXD7 560 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 FRRS1Q6ZNA5 592 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 NDUFA11Q86Y39 141 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 TDRPQ86YL5 185 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 ZNF567Q8N184 647 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 TMCO5AQ8N6Q1 288 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 ARL6IP6Q8N6S5 226 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 GBP7Q8N8V2 638 aaPredicted RBP4.08□□□□□ -1.76
SDCBP-205ENST00000447267 CCDC89Q8N998 374 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 HMCN2Q8NDA2 5059 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 OR52K1Q8NGK4 314 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 ANKRD49Q8WVL7 239 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 SSMEM1Q8WWF3 244 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.08□□□□□ -1.76
SDCBP-205ENST00000447267 RGMAQ96B86 450 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 LRRC45Q96CN5 670 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 COQ8BQ96D53 544 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 FOPNLQ96NB1 174 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 RNF157Q96PX1 679 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 ALS2CR12Q96Q35 445 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 FERMT1Q9BQL6 677 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 SPNS1Q9H2V7 528 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.08□□□□□ -1.76
SDCBP-205ENST00000447267 ZDHHC8Q9ULC8 765 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 TMED5Q9Y3A6 229 aa4.08□□□□□ -1.76
SDCBP-205ENST00000447267 MRPS18CQ9Y3D5 142 aaKnown RBP4.08□□□□□ -1.76
SDCBP-205ENST00000447267 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.08□□□□□ -1.76
SDCBP-205ENST00000447267 CCDC162PA2VCL2 907 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms