RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 LIMK1P53667 647 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 RPS7P62081 194 aaKnown RBP17.29■□□□□ 0.36
USP39-202ENST00000409025 CRMP1Q14194 572 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 ZNF74Q16587 644 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 OR2G6Q5TZ20 316 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 FAM199XQ6PEV8 388 aaPredicted RBP17.29■□□□□ 0.36
USP39-202ENST00000409025 LINC00299Q6ZSB3 139 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 LHFPL3Q86UP9 236 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 MISPQ8IVT2 679 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 OR51G2Q8NGK0 314 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 LIPHQ8WWY8 451 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 ZNF524Q96C55 264 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 TMCO6Q96DC7 493 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 SECISBP2Q96T21 854 aaKnown RBP17.29■□□□□ 0.36
USP39-202ENST00000409025 KLHDC3Q9BQ90 382 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 JAM3Q9BX67 310 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 NDUFB11Q9NX14 153 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 SEC14L4Q9UDX3 406 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 IER3IP1Q9Y5U9 82 aa17.29■□□□□ 0.36
USP39-202ENST00000409025 TSPAN19P0C672 248 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 NAGAP17050 411 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 CXCR1P25024 350 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 CCKBRP32239 447 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 RPS3AP61247 264 aaKnown RBP17.28■□□□□ 0.36
USP39-202ENST00000409025 RPS4XP62701 263 aaKnown RBP17.28■□□□□ 0.36
USP39-202ENST00000409025 PLA2G2CQ5R387 149 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 GDPGP1Q6ZNW5 385 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 IGFN1Q86VF2 1251 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 KLHL36Q8N4N3 616 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 B4GALNT2Q8NHY0 566 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 GATAD2BQ8WXI9 593 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 CMKLR1Q99788 373 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 OR51V1Q9H2C8 321 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 NANSQ9NR45 359 aa17.28■□□□□ 0.36
USP39-202ENST00000409025 SPIN1Q9Y657 262 aaPredicted RBP17.28■□□□□ 0.36
USP39-202ENST00000409025 VCANP13611 3396 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 B4E171 279 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 CPEP16870 476 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 TSPAN7P41732 249 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 SLC16A1P53985 500 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 FBXW4P57775 412 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 EGR4Q05215 589 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 TOMM34Q15785 309 aaPredicted RBP17.27■□□□□ 0.36
USP39-202ENST00000409025 ZNF829Q3KNS6 432 aaPredicted RBP17.27■□□□□ 0.36
USP39-202ENST00000409025 SOWAHCQ53LP3 525 aaPredicted RBP17.27■□□□□ 0.36
USP39-202ENST00000409025 LIPKQ5VXJ0 399 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 NUP54Q7Z3B4 507 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 PHC2Q8IXK0 858 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 SIRT6Q8N6T7 355 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 FAM98AQ8NCA5 519 aaKnown RBP17.27■□□□□ 0.36
USP39-202ENST00000409025 OR52E2Q8NGJ4 325 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 TEAD3Q99594 435 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 MMP25Q9NPA2 562 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 ERVK13-1Q9NX77 482 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 STUB1Q9UNE7 303 aa17.27■□□□□ 0.36
USP39-202ENST00000409025 ZC3H12DA2A288 527 aaKnown RBP17.27■□□□□ 0.35
USP39-202ENST00000409025 CCDC182A6NF36 153 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 TMEM200CA6NKL6 621 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 C17orf51A8MQB3 221 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 J3QRE1 110 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 ZNF354AO60765 605 aaPredicted RBP17.27■□□□□ 0.35
USP39-202ENST00000409025 GPX5O75715 221 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 BMXP51813 675 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 FAM198BQ6UWH4 519 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 B3GLCTQ6Y288 498 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 CYB561A3Q8NBI2 242 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 DUSP19Q8WTR2 217 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 KISS1RQ969F8 398 aaPredicted RBP17.27■□□□□ 0.35
USP39-202ENST00000409025 PMEPA1Q969W9 287 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 ARHGAP9Q9BRR9 750 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 SLIRPQ9GZT3 109 aaKnown RBP17.27■□□□□ 0.35
USP39-202ENST00000409025 RNF167Q9H6Y7 350 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 EXOSC4Q9NPD3 245 aaKnown RBP17.27■□□□□ 0.35
USP39-202ENST00000409025 PMF1-BGLAPU3KQ54 211 aa17.27■□□□□ 0.35
USP39-202ENST00000409025 IDH3BO43837 385 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 HIST1H1CP16403 213 aaKnown RBP17.26■□□□□ 0.35
USP39-202ENST00000409025 SLC2A5P22732 501 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 ANKDD1AQ495B1 522 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 CROCCP3Q8IVE0 287 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 ACBD7Q8N6N7 88 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 OR4K13Q8NH42 304 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 OR52N1Q8NH53 320 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 GPR119Q8TDV5 335 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 HGDQ93099 445 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 BORCS5Q969J3 196 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 MOGAT1Q96PD6 335 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 GPX7Q96SL4 187 aaPredicted RBP17.26■□□□□ 0.35
USP39-202ENST00000409025 NRIP3Q9NQ35 241 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 HIF3AQ9Y2N7 669 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 PTRH2Q9Y3E5 179 aaKnown RBP17.26■□□□□ 0.35
USP39-202ENST00000409025 R4GN57 208 aa17.26■□□□□ 0.35
USP39-202ENST00000409025 LOC102723996A0A087X1L8 192 aa17.25■□□□□ 0.35
USP39-202ENST00000409025 BLOC1S5-TXNDC5H3BN57 136 aa17.25■□□□□ 0.35
USP39-202ENST00000409025 ARPC3O15145 178 aa17.25■□□□□ 0.35
USP39-202ENST00000409025 POLR2HP52434 150 aaKnown RBP17.25■□□□□ 0.35
USP39-202ENST00000409025 QPRTQ15274 297 aa17.25■□□□□ 0.35
USP39-202ENST00000409025 ISXQ2M1V0 245 aa17.25■□□□□ 0.35
USP39-202ENST00000409025 GXYLT1Q4G148 440 aa17.25■□□□□ 0.35
USP39-202ENST00000409025 ZNF485Q8NCK3 441 aa17.25■□□□□ 0.35
USP39-202ENST00000409025 SDR9C7Q8NEX9 313 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms