RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ZNF440Q8IYI8 595 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 ZNF611Q8N823 705 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 ANKFN1Q8N957 763 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 ZNF75CPQ92670 426 aaPredicted RBP16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 GSX2Q9BZM3 304 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 ESRP2Q9H6T0 727 aaKnown RBP16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 RMND5AQ9H871 391 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 CTPS2Q9NRF8 586 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 SDR39U1Q9NRG7 319 aaPredicted RBP16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 THUMPD1Q9NXG2 353 aaKnown RBP16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 CALML5Q9NZT1 146 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 TRAPPC4Q9Y296 219 aa16.92■□□□□ 0.3
CCDC28A-203ENST00000617445 GPR171O14626 319 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 HS3ST1O14792 307 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 DIAPH2O60879 1101 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 FESP07332 822 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 INHBBP09529 407 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 RPS4Y1P22090 263 aaKnown RBP16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 CDKN2CP42773 168 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 IDH2P48735 452 aaKnown RBP16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 ZSWIM7Q19AV6 140 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 ABLIM2Q6H8Q1 611 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 BHLHA15Q7RTS1 189 aaPredicted RBP16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 P2RY8Q86VZ1 359 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 ADGRG3Q86Y34 549 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 PIGXQ8TBF5 258 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 TMEM171Q8WVE6 324 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 WDR60Q8WVS4 1066 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 POTEKPQ9BYX7 375 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 CXorf56Q9H5V9 222 aa16.91■□□□□ 0.3
CCDC28A-203ENST00000617445 C9JVG2 144 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 UBDO15205 165 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 ZNF208O43345 1280 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 BCAS1O75363 584 aaPredicted RBP16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 GSNP06396 782 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 CHRM4P08173 479 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 ADSLP30566 484 aaPredicted RBP16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 SLC1A3P43003 542 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 POLR2HP52434 150 aaKnown RBP16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 TAB1Q15750 504 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 ZNF100Q8IYN0 542 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 IGFBPL1Q8WX77 278 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 CNOT9Q92600 299 aaKnown RBP16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 DDIT4LQ96D03 193 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 ITCHQ96J02 903 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 BDH2Q9BUT1 245 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 TMEM181Q9P2C4 612 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 P2RX2Q9UBL9 471 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 RNF115Q9Y4L5 304 aa16.9■□□□□ 0.3
CCDC28A-203ENST00000617445 CFAP73A6NFT4 308 aa16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 CLDN24A6NM45 220 aa16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 EIF1BO60739 113 aaKnown RBP16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 ANP32DO95626 131 aa16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 CD3EP07766 207 aa16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 SLC16A1P53985 500 aa16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 SLC9B1Q4ZJI4 515 aa16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 COX20Q5RI15 118 aa16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 NCMAPQ5T1S8 102 aa16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 MUCL1Q96DR8 90 aa16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 POM121Q96HA1 1249 aa16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 ZNF300Q96RE9 604 aaPredicted RBP16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 GSX1Q9H4S2 264 aaPredicted RBP16.89■□□□□ 0.29
CCDC28A-203ENST00000617445 TMED7-TICAM2A0A0A6YYA0 188 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 TMEM247A6NEH6 219 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 PLAUP00749 431 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 C1QCP02747 245 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 COX5AP20674 150 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 POLR2JP52435 117 aaKnown RBP16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 CRISP3P54108 245 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 SLC35A1P78382 337 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 PLAURQ03405 335 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 CAPRIN1Q14444 709 aaKnown RBP16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 TIMM23BQ5SRD1 257 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 MRPL2Q5T653 305 aaKnown RBP16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 AGBL2Q5U5Z8 902 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 YTHDF3Q7Z739 585 aaKnown RBP16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 MIER2Q8N344 545 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 PNPT1Q8TCS8 783 aaKnown RBP16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 AKAP1Q92667 903 aaKnown RBP eCLIP16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 PERPQ96FX8 193 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 ARL5BQ96KC2 179 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 ARMC7Q9H6L4 198 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 TPT1P8Q9HAU6 139 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 ZNF701Q9NV72 531 aaPredicted RBP16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 PRSS50Q9UI38 385 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 OSGIN1Q9UJX0 560 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 NOSIPQ9Y314 301 aaKnown RBP16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 TMED7Q9Y3B3 224 aa16.88■□□□□ 0.29
CCDC28A-203ENST00000617445 NSD1Q96L73 2696 aaPredicted RBP16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 TLN2Q9Y4G6 2542 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 ZNF716A6NP11 495 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 ADAM11O75078 769 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 PGM3O95394 542 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 TGDSO95455 350 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 GGT1P19440 569 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 CRATP43155 626 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 PTH2RP49190 550 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 MVDP53602 400 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 OR2B6P58173 313 aa16.87■□□□□ 0.29
CCDC28A-203ENST00000617445 H3F3AP84243 136 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms