RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 UQCRFS1P47985 274 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 PIN1Q13526 163 aaPredicted RBP26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 BCL2A1Q16548 175 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 ELOA3BQ3SY89 546 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 SYT14P1Q58G82 188 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 EMC4Q5J8M3 183 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 SWT1Q5T5J6 900 aaKnown RBP26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 PM20D2Q8IYS1 436 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 MEIOBQ8N635 442 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 ELOA3Q8NG57 546 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 C7orf34Q96L11 122 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 KLHL15Q96M94 604 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 POLR2J2Q9GZM3 115 aaKnown RBP26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 POLR2J3Q9H1A7 115 aaKnown RBP26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 ENPP4Q9Y6X5 453 aa26.67■■□□□ 1.86
LIMCH1-211ENST00000509638 KIAA1549Q9HCM3 1950 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 ERICH4A6NGS2 130 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 H0Y3Z8 333 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 J3KTA2 159 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 EIF1AYO14602 144 aaKnown RBP26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 PRRG2O14669 202 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 THY1P04216 161 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 SUCLG1P53597 346 aaKnown RBP26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 Q6ZPB1 254 aaPredicted RBP26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 TSEN54Q7Z6J9 526 aaKnown RBP26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 ZNF605Q86T29 641 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 SLC41A3Q96GZ6 507 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 OR11A1Q9GZK7 315 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 C12orf10Q9HB07 376 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 NDUFAF4Q9P032 175 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 TINAGQ9UJW2 476 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 SLC7A7Q9UM01 511 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 A4GNTQ9UNA3 340 aa26.66■■□□□ 1.86
LIMCH1-211ENST00000509638 GJE1A6NN92 205 aa26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 CHP2O43745 196 aa26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 OR5F1O95221 314 aa26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 PNMTP11086 282 aa26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 GNLYP22749 145 aa26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 SLC7A1P30825 629 aa26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 CLDN15P56746 228 aa26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 TMEM176BQ3YBM2 270 aaPredicted RBP26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 GXYLT1Q4G148 440 aa26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 POP5Q969H6 163 aaKnown RBP26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 SLC38A4Q969I6 547 aa26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 MAGIXQ9H6Y5 334 aa26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 SH3BGRL2Q9UJC5 107 aa26.65■■□□□ 1.86
LIMCH1-211ENST00000509638 DHRS12A0PJE2 317 aa26.64■■□□□ 1.86
LIMCH1-211ENST00000509638 CTU2Q2VPK5 515 aaKnown RBP26.64■■□□□ 1.86
LIMCH1-211ENST00000509638 FAM98BQ52LJ0 330 aaKnown RBP26.64■■□□□ 1.86
LIMCH1-211ENST00000509638 ZNF585AQ6P3V2 769 aa26.64■■□□□ 1.86
LIMCH1-211ENST00000509638 GDF7Q7Z4P5 450 aa26.64■■□□□ 1.86
LIMCH1-211ENST00000509638 ADGRG5Q8IZF4 528 aa26.64■■□□□ 1.86
LIMCH1-211ENST00000509638 ALKBH4Q9NXW9 302 aa26.64■■□□□ 1.86
LIMCH1-211ENST00000509638 RIMS3Q9UJD0 308 aa26.64■■□□□ 1.86
LIMCH1-211ENST00000509638 OSGIN2Q9Y236 505 aa26.64■■□□□ 1.86
LIMCH1-211ENST00000509638 ZC3H12DA2A288 527 aaKnown RBP26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 FIGNL2A6NMB9 653 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 TNFSF11O14788 317 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 ZNF208O43345 1280 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 LYPD3O95274 346 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 FABP3P05413 133 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 TFPIP10646 304 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 PTNP21246 168 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 MAP2K6P52564 334 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 ESPNLQ6ZVH7 1005 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 CYP4Z1Q86W10 505 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 ZDHHC21Q8IVQ6 265 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 DDIT4LQ96D03 193 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 RAB3IPQ96QF0 476 aaPredicted RBP26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 OR5B2Q96R09 309 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 ZNF300Q96RE9 604 aaPredicted RBP26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 IL1RAPQ9NPH3 570 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 RHCGQ9UBD6 479 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 HIVEP3Q5T1R4 2406 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 UBR5O95071 2799 aaPredicted RBP26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 A0A0J9YW62 118 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 TCRBV3S1A0A5B6 114 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 FFAR1O14842 300 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 DIRAS1O95057 198 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 MT-ND1P03886 318 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 WDR88Q6ZMY6 472 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 OFCC1Q8IZS5 231 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 DNAJA3Q96EY1 480 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 ADGRG7Q96K78 797 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 COQ10BQ9H8M1 238 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 AURKCQ9UQB9 309 aa26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 FAM32AQ9Y421 112 aaKnown RBP26.63■■□□□ 1.85
LIMCH1-211ENST00000509638 A0A087WUJ7 227 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 A0A1W2PNR3 127 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 PRSS23O95084 383 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 GPIP06744 558 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 ITGA2P17301 1181 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 EIF1AXP47813 144 aaKnown RBP26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 CHRNB3Q05901 458 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 IQCCQ4KMZ1 466 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 C3P1Q6ZMU1 363 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 DOLPP1Q86YN1 238 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 OR2V1Q8NHB1 315 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 CANT1Q8WVQ1 401 aa26.62■■□□□ 1.85
LIMCH1-211ENST00000509638 RSRC1Q96IZ7 334 aaKnown RBP26.62■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms