RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CDK20Q8IZL9 346 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 PSD4Q8NDX1 1056 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 SETD9Q8NE22 299 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 FAM81AQ8TBF8 368 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 FBLIM1Q8WUP2 373 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 TMEM234Q8WY98 164 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 ING2Q9H160 280 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 AASSQ9UDR5 926 aa16.89■□□□□ 0.29
CLN3-206ENST00000360019 APC2O95996 2303 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 A0A0G2JMM0 328 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 A0A1W2PPB8 328 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 A0A1W2PRS3 328 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 UNC119BA6NIH7 251 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 A6NL46 340 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 KIR3DP1A8MWS1 328 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 EFCAB9A8MZ26 197 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 LRRN3E7EW58 273 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 SNPHO15079 494 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 EFSO43281 561 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 CCNA2P20248 432 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 CXCR1P25024 350 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 ELK4P28324 431 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 FXYD6P3P58550 94 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 CDC20Q12834 499 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 CRTC2Q53ET0 693 aaPredicted RBP16.88■□□□□ 0.29
CLN3-206ENST00000360019 SLX4IPQ5VYV7 408 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 LAIR2Q6ISS4 152 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 PLCZ1Q86YW0 608 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 ENTHD1Q8IYW4 607 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 ZNF786Q8N393 782 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 IQCF1Q8N6M8 205 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 OR13C2Q8NGS9 318 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 KCNE4Q8WWG9 221 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 IL20Q9NYY1 176 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 LRFN1Q9P244 771 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 CDH10Q9Y6N8 788 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 HSPE1-MOB4S4R3N1 261 aa16.88■□□□□ 0.29
CLN3-206ENST00000360019 TMED7-TICAM2A0A0A6YYA0 188 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 ZNF891A8MT65 544 aaPredicted RBP16.87■□□□□ 0.29
CLN3-206ENST00000360019 M0R129 80 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 NEURL1O76050 574 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 SNX4O95219 450 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 WDPCPO95876 746 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 P04436 131 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 SAGP10523 405 aaPredicted RBP16.87■□□□□ 0.29
CLN3-206ENST00000360019 DNASE1L1P49184 302 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 FOXF1Q12946 379 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 PLPPR5Q32ZL2 321 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 SPINK14Q6IE38 97 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 SLC46A3Q7Z3Q1 461 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 CLDN22Q8N7P3 220 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 OR4K17Q8NGC6 315 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 CNIH3Q8TBE1 160 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 SGTBQ96EQ0 304 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 C1GALT1C1Q96EU7 318 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 TMEM41AQ96HV5 264 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 SIGLEC12Q96PQ1 595 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 HHATLQ9HCP6 504 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 SACM1LQ9NTJ5 587 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 GPR83Q9NYM4 423 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 ABI3Q9P2A4 366 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 IL20RAQ9UHF4 553 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 RNF6Q9Y252 685 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 SIGLEC7Q9Y286 467 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 TMED7Q9Y3B3 224 aa16.87■□□□□ 0.29
CLN3-206ENST00000360019 TRAV27A0A087WT01 109 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 ZC3H12DA2A288 527 aaKnown RBP16.86■□□□□ 0.29
CLN3-206ENST00000360019 MAGEA13PA6NCF6 341 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 SHISA8B8ZZ34 492 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 SUSD5O60279 629 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 IGF2P01344 180 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 HTR3AP46098 478 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 GIPRP48546 466 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 ZNF41P51814 821 aaPredicted RBP16.86■□□□□ 0.29
CLN3-206ENST00000360019 NUP107P57740 925 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 CDK5Q00535 292 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 FHL1Q13642 323 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 GINS1Q14691 196 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 MAD2L1BPQ15013 274 aaPredicted RBP16.86■□□□□ 0.29
CLN3-206ENST00000360019 SLC25A53Q5H9E4 307 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 CLEC12AQ5QGZ9 265 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 C12orf73Q69YU5 71 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 LRRC17Q8N6Y2 441 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 TEX47Q8TBZ9 253 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 FANK1Q8TC84 345 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 KTI12Q96EK9 354 aaPredicted RBP16.86■□□□□ 0.29
CLN3-206ENST00000360019 GNRHR2Q96P88 292 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 UTP23Q9BRU9 249 aaKnown RBP16.86■□□□□ 0.29
CLN3-206ENST00000360019 OR52D1Q9H346 318 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 RASSF1Q9NS23 344 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 DEPPQ9NTK1 212 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 PLA2G3Q9NZ20 509 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 POLHQ9Y253 713 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 MSRB2Q9Y3D2 182 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 TMEM72A0PK05 275 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 KLK10O43240 276 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 TRIM3O75382 744 aaPredicted RBP16.86■□□□□ 0.29
CLN3-206ENST00000360019 TNFAIP8O95379 198 aa16.86■□□□□ 0.29
CLN3-206ENST00000360019 CH25HO95992 272 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms