RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 KHDRBS3O75525 346 aaKnown RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 PLGP00747 810 aaPredicted RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 ANXA7P20073 488 aaKnown RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 EDNRAP25101 427 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 SELENOPP49908 381 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 VASPP50552 380 aaPredicted RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 SMIM11AP58511 58 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 PRDX1Q06830 199 aaKnown RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 BTN1A1Q13410 526 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 IRF5Q13568 498 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 GARNL3Q5VVW2 1013 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 VASNQ6EMK4 673 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 C1orf94Q6P1W5 598 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 SFXN4Q6P4A7 337 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 NHLRC1Q6VVB1 395 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 FRRS1Q6ZNA5 592 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 OAFQ86UD1 273 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 PRR22Q8IZ63 422 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 FTMTQ8N4E7 242 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 SLAIN1Q8ND83 568 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 SLC22A8Q8TCC7 542 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 GNPDA2Q8TDQ7 276 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 NMNAT3Q96T66 252 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 PRSS16Q9NQE7 514 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 HCN3Q9P1Z3 774 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 ZNF69Q9UC07 566 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 TBC1D29Q9UFV1 150 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 SOX1O00570 391 aaPredicted RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 SCO2O43819 266 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 ADAM11O75078 769 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 RD3LP0DJH9 198 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 TMIGD3P0DMS9 266 aaPredicted RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 HTR2AP28223 471 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 OMPP47874 163 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 ERVK-25P63136 954 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 RAB40BQ12829 278 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 PLA2G7Q13093 441 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 MINDY4Q4G0A6 757 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 TOR2AQ5JU69 321 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 STPG1Q5TH74 334 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 ABHD17CQ6PCB6 329 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 METTL3Q86U44 580 aaKnown RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 SLC44A3Q8N4M1 653 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 LGALS14Q8TCE9 139 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 THAP4Q8WY91 577 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 PTP4A1Q93096 173 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 RASD2Q96D21 266 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 CD180Q99467 661 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 GINS4Q9BRT9 223 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 FUZQ9BT04 418 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 SPATA9Q9BWV2 254 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 IER3IP1Q9Y5U9 82 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 RP1L1Q8IWN7 2480 aaPredicted RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 DMDP11532 3685 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 ARPC1BO15143 372 aaKnown RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 KCNAB3O43448 404 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 F13BP05160 661 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 F3P13726 295 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 ATF1P18846 271 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 DNASE1P24855 282 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 LIMK1P53667 647 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 GAS1P54826 345 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 KIAA1024LP59773 190 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 RPS15P62841 145 aaKnown RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 ELAVL3Q14576 367 aaKnown RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 MZT2AQ6P582 158 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 LILRA6Q6PI73 481 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 LCTLQ6UWM7 567 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 SMPDL3BQ92485 455 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 PPP1R14AQ96A00 147 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 UQCC2Q9BRT2 126 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 TMEM168Q9H0V1 697 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 SIDT1Q9NXL6 827 aaKnown RBP8.02□□□□□ -1.13
USP40-203ENST00000427112 IKZF2Q9UKS7 526 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 SCML1Q9UN30 329 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 ICKQ9UPZ9 632 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 KIAA1671Q9BY89 1806 aa8.02□□□□□ -1.13
USP40-203ENST00000427112 OR6C74A6NCV1 312 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 UNC119BA6NIH7 251 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 CASC3O15234 703 aaKnown RBP8.01□□□□□ -1.13
USP40-203ENST00000427112 MRPS14O60783 128 aaKnown RBP8.01□□□□□ -1.13
USP40-203ENST00000427112 TSPAN5P62079 268 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 TSPAN31Q12999 210 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 OR1Q1Q15612 314 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 OCLNQ16625 522 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 ST3GAL2Q16842 350 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 PRRT3Q5FWE3 981 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 C3orf38Q5JPI3 329 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 EOGTQ5NDL2 527 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 C19orf48Q6RUI8 117 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 DGAT2L6Q6ZPD8 337 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 OR4C6Q8NH72 309 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 ABHD4Q8TB40 342 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 PRDM7Q9NQW5 492 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 BABAM2Q9NXR7 383 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 PRKAG2Q9UGJ0 569 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 KCNE5Q9UJ90 142 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 CACNG2Q9Y698 323 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 TRBV2A0A0J9YWF9 115 aa8.01□□□□□ -1.13
USP40-203ENST00000427112 LATS1O95835 1130 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms