RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SLC43A2Q8N370 569 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 RNF128Q8TEB7 428 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 ST8SIA1Q92185 356 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 PIGTQ969N2 578 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 PIP5K1AQ99755 562 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 SERHL2Q9H4I8 314 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 CLEC4AQ9UMR7 237 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 GPR52Q9Y2T5 361 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 PRKD3O94806 890 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 NID1P14543 1247 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 FPR1P21462 350 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 AGTR1P30556 359 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 S100A3P33764 101 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 SLC18A1P54219 525 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 BST1Q10588 318 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 TMEM201Q5SNT2 666 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 STAC2Q6ZMT1 411 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 EIF3MQ7L2H7 374 aaKnown RBP17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 SPATA19Q7Z5L4 167 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 TMCO5AQ8N6Q1 288 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 ZFP90Q8TF47 636 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 TMEM234Q8WY98 164 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 NEURL3Q96EH8 262 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 PIK3IP1Q96FE7 263 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 MARK4Q96L34 752 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 PAIP2Q9BPZ3 127 aaKnown RBP17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 HDHD5Q9BXW7 423 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 OR51I1Q9H343 314 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 THAP1Q9NVV9 213 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 DSCAMO60469 2012 aa17.03■□□□□ 0.32
CCDC28A-203ENST00000617445 FREM1Q5H8C1 2179 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 TRPC5OSA6NMA1 111 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 E9PBE3 544 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 SIAH2O43255 324 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 FCMRO60667 390 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 UGT2B17O75795 530 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 CPSF4O95639 269 aaKnown RBP17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 CSTAP01040 98 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 PSMB1P20618 241 aaKnown RBP17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 SLC7A1P30825 629 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 HOXC12P31275 282 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 RAC3P60763 192 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 PHC1P78364 1004 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 FOXD4Q12950 439 aaPredicted RBP17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 QPRTQ15274 297 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 TOMM34Q15785 309 aaPredicted RBP17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 BEX5Q5H9J7 111 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 SHEQ5VZ18 495 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 SAXO2Q658L1 398 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 FCRLAQ7L513 359 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 ZNF550Q7Z398 422 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 ANKRD46Q86W74 232 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 TRIML2Q8N7C3 387 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 RFWD2Q8NHY2 731 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 XAGE5Q8WWM1 108 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 ROBO4Q8WZ75 1007 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 CCDC115Q96NT0 180 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 SAP130Q9H0E3 1048 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 SERINC1Q9NRX5 453 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 PNPOQ9NVS9 261 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 KLHL13Q9P2N7 655 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 BTNL2Q9UIR0 455 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 MKLN1Q9UL63 735 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 SLC35A3Q9Y2D2 325 aa17.02■□□□□ 0.32
CCDC28A-203ENST00000617445 SLCO1B7G3V0H7 640 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 ARHGEF9O43307 516 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 KIAA0513O60268 411 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 OR12D1P0DN82 309 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 PGCP20142 388 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 SHC1P29353 583 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 CHI3L1P36222 383 aaPredicted RBP17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 KHKP50053 298 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 ANXA11P50995 505 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 CCR4P51679 360 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 NR1H2P55055 460 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 SKP2Q13309 424 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 ACKR1Q16570 336 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 NDUFAF6Q330K2 333 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 FAM174BQ3ZCQ3 159 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 SPANXN4Q5MJ08 99 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 C3orf33Q6P1S2 294 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 C20orf204Q6ZNR8 217 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 LRRC75A-AS1Q8N1F1 130 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 CLEC4FQ8N1N0 589 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 STEAP2Q8NFT2 490 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 RAB3IL1Q8TBN0 382 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 ABHD3Q8WU67 409 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 ZC3HAV1LQ96H79 300 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 USB1Q9BQ65 265 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 THUMPD3Q9BV44 507 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 WDR45Q9Y484 360 aa17.01■□□□□ 0.31
CCDC28A-203ENST00000617445 NF1P21359 2839 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 HDAC3O15379 428 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 YES1P07947 543 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 FKBP2P26885 142 aaKnown RBP17■□□□□ 0.31
CCDC28A-203ENST00000617445 RNF144AP50876 292 aaPredicted RBP17■□□□□ 0.31
CCDC28A-203ENST00000617445 TIGD2Q4W5G0 525 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 ATG16L1Q676U5 607 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 ANKRD34AQ69YU3 496 aa17■□□□□ 0.31
CCDC28A-203ENST00000617445 CXorf67Q86X51 503 aaPredicted RBP17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms