RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PATL1Q86TB9 770 aaKnown RBP26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 ARMC8Q8IUR7 673 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 CMIPQ8IY22 773 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 OR2M3Q8NG83 312 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 UBQLN3Q9H347 655 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 DSN1Q9H410 356 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 SERPINB7O75635 380 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 ENDOUP21128 410 aaKnown RBP26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 EEF1A1P68104 462 aaKnown RBP26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 CEACAM7Q14002 265 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 RNF220Q5VTB9 566 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 CBLN3Q6UW01 205 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 CCDC121Q6ZUS5 278 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 CCDC80Q76M96 950 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 FAM71CQ8NEG0 241 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 TNIP2Q8NFZ5 429 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 FIG4Q92562 907 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 CD300AQ9UGN4 299 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 EGFL7Q9UHF1 273 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 PRPF19Q9UMS4 504 aaKnown RBP26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 GSTA4O15217 222 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 ATP5HO75947 161 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 PGM1P36871 562 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 CCR4P51679 360 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 CRYBA2P53672 197 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 MLLT10P55197 1068 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 FAM109AQ8N4B1 249 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 B4GALNT2Q8NHY0 566 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 TAMM41Q96BW9 452 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 BTBD10Q9BSF8 475 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 OLAHQ9NV23 265 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 RLIMQ9NVW2 624 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 ZNF232Q9UNY5 417 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 ZNF407Q9C0G0 2248 aa26.96■■□□□ 1.91
LIMCH1-211ENST00000509638 CDHR4A6H8M9 788 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 M0QX08 132 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 CXCR6O00574 342 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 CBR3O75828 277 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 CYP7B1O75881 506 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 MFN2O95140 757 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 PRKAR1BP31321 381 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 GABPB1Q06547 395 aaPredicted RBP26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 DMTNQ08495 405 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 TOMM20Q15388 145 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 LRRC23Q53EV4 343 aaPredicted RBP26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 ARHGAP24Q8N264 748 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 SMYD1Q8NB12 490 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 CNOT9Q92600 299 aaKnown RBP26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 ASF1BQ9NVP2 202 aa26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 DNAJB12Q9NXW2 375 aaKnown RBP26.95■■□□□ 1.9
LIMCH1-211ENST00000509638 PDE5AO76074 875 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 CELA3AP09093 270 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 HTR1EP28566 365 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 SPATS1Q496A3 300 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 SIAH3Q8IW03 269 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 NR4A3Q92570 626 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 ARSGQ96EG1 525 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 KLHDC3Q9BQ90 382 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 RSPO3Q9BXY4 272 aaPredicted RBP26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 ZDHHC11Q9H8X9 412 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 DKKL1Q9UK85 242 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 ICAM5Q9UMF0 924 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 CHST2Q9Y4C5 530 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 SHANK1Q9Y566 2161 aa26.94■■□□□ 1.9
LIMCH1-211ENST00000509638 EIF4E2O60573 245 aaKnown RBP26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 C1QL1O75973 258 aa26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 NCK1P16333 377 aa26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 GGT1P19440 569 aa26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 MSX1P28360 303 aa26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 MSX2P35548 267 aaPredicted RBP26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 RASSF2P50749 326 aa26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 CLIP4Q8N3C7 705 aa26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 FAR1Q8WVX9 515 aa26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 THTPAQ9BU02 230 aa26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 PTGES2Q9H7Z7 377 aa26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 DNAJC13O75165 2243 aa26.93■■□□□ 1.9
LIMCH1-211ENST00000509638 NPIPA5E9PKD4 350 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 MST1P26927 711 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 P2RX1P51575 399 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 EIPR1Q53HC9 387 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 CMPK2Q5EBM0 449 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 ZNF324BQ6AW86 544 aaPredicted RBP26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 DHRS4L2Q6PKH6 230 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 COMTD1Q86VU5 262 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 ZNF843Q8N446 348 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 CPT1CQ8TCG5 803 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 SLC26A7Q8TE54 656 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 C1GALT1C1Q96EU7 318 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 CLPTM1LQ96KA5 538 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 LAT2Q9GZY6 243 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 ARMC7Q9H6L4 198 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 EXOSC3Q9NQT5 275 aaKnown RBP26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 AGPAT4Q9NRZ5 378 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 QPCTLQ9NXS2 382 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 NPIPA1Q9UND3 350 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 EIF4E1BA6NMX2 242 aaKnown RBP26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 SUV39H1O43463 412 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 TPST1O60507 370 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 TRAPPC6AO75865 159 aa26.92■■□□□ 1.9
LIMCH1-211ENST00000509638 NUDT14O95848 222 aa26.92■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms