RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ZNF585AQ6P3V2 769 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 SLC2A7Q6PXP3 512 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 CMIPQ8IY22 773 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 GTPBP8Q8N3Z3 284 aaPredicted RBP10.75□□□□□ -0.69
VPS52-213ENST00000461743 FAM71CQ8NEG0 241 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 B4GALNT2Q8NHY0 566 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 PHOSPHO1Q8TCT1 267 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 ZPLD1Q8TCW7 415 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 BCAS4Q8TDM0 211 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 ITLN2Q8WWU7 325 aaPredicted RBP10.75□□□□□ -0.69
VPS52-213ENST00000461743 ASB5Q8WWX0 329 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 RAB8BQ92930 207 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 NSRP1Q9H0G5 558 aaKnown RBP10.75□□□□□ -0.69
VPS52-213ENST00000461743 SLC6A13Q9NSD5 602 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 COQ3Q9NZJ6 369 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 MED11Q9P086 117 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 SLC6A5Q9Y345 797 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 PCDHB14Q9Y5E9 798 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 FAM215AQ9Y5M1 114 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 DSPPQ9NZW4 1301 aa10.75□□□□□ -0.69
VPS52-213ENST00000461743 UNC79Q9P2D8 2635 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 TRBV5-3A0A0A0MS03 114 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 CD8B2A6NJW9 211 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 BBIP1A8MTZ0 92 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 ANKRD65E5RJM6 399 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 ZNF264O43296 627 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 HCRTR2O43614 444 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 ZIC2O95409 532 aaPredicted RBP10.74□□□□□ -0.69
VPS52-213ENST00000461743 H6PDO95479 791 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 SNRPB2P08579 225 aaKnown RBP10.74□□□□□ -0.69
VPS52-213ENST00000461743 ZNF708P17019 499 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 RPS4Y1P22090 263 aaKnown RBP10.74□□□□□ -0.69
VPS52-213ENST00000461743 ADH6P28332 368 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 CHRNB4P30926 498 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 CRATP43155 626 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 LHX2P50458 406 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 EEFSECP57772 596 aaKnown RBP10.74□□□□□ -0.69
VPS52-213ENST00000461743 CBFBQ13951 182 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 ZSWIM7Q19AV6 140 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 TMEM44Q2T9K0 475 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 PLPPR5Q32ZL2 321 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 COX20Q5RI15 118 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 DCST1Q5T197 706 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 PDZK1Q5T2W1 519 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 RIPPLY2Q5TAB7 128 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 EIF3MQ7L2H7 374 aaKnown RBP10.74□□□□□ -0.69
VPS52-213ENST00000461743 MAMDC2Q7Z304 686 aaPredicted RBP10.74□□□□□ -0.69
VPS52-213ENST00000461743 MRGPRGQ86SM5 289 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 MARVELD2Q8N4S9 558 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 METTL25Q8N6Q8 603 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 ZNF614Q8N883 585 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 OR5M9Q8NGP3 310 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 PNPT1Q8TCS8 783 aaKnown RBP10.74□□□□□ -0.69
VPS52-213ENST00000461743 C10orf82Q8WW14 230 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 RND1Q92730 232 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 ARSGQ96EG1 525 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 WDYHV1Q96HA8 205 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 ZFP3Q96NJ6 502 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 UCN2Q96RP3 112 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 TTYH2Q9BSA4 534 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 SLC38A1Q9H2H9 487 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 EXOSC3Q9NQT5 275 aaKnown RBP10.74□□□□□ -0.69
VPS52-213ENST00000461743 ICAM5Q9UMF0 924 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 CAMK2AQ9UQM7 478 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 NDUFAF1Q9Y375 327 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 L3MBTL1Q9Y468 752 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 AP4B1Q9Y6B7 739 aa10.74□□□□□ -0.69
VPS52-213ENST00000461743 ANKHD1Q8IWZ3 2542 aaKnown RBP10.73□□□□□ -0.69
VPS52-213ENST00000461743 NPIPA5A0A0B4J1W7 369 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 OR2M5A3KFT3 312 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 C17orf51A8MQB3 221 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 NPIPA7E9PJI5 369 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 H0Y3Z8 333 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 GTPBP1O00178 669 aaKnown RBP10.73□□□□□ -0.69
VPS52-213ENST00000461743 CLIC1O00299 241 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 ETV2O00321 342 aaPredicted RBP10.73□□□□□ -0.69
VPS52-213ENST00000461743 ZNHIT1O43257 154 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 FCMRO60667 390 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 DNAJA2O60884 412 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 EPPINO95925 133 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 DBIP07108 87 aaKnown RBP10.73□□□□□ -0.69
VPS52-213ENST00000461743 CHRM4P08173 479 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 NPIPA8P0DM63 369 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 NR2F1P10589 423 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 GP1BBP13224 206 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 POU3F2P20265 443 aaPredicted RBP10.73□□□□□ -0.69
VPS52-213ENST00000461743 TIMP3P35625 211 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 CASP9P55211 416 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 CLDN18P56856 261 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 NUP107P57740 925 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 SKP2Q13309 424 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 RGNQ15493 299 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 GTDC1Q4AE62 458 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 PAGE3Q5JUK9 113 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 NSUN5P2Q63ZY6 315 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 RTL6Q6ICC9 239 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 ADGRE4PQ86SQ3 457 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 DHDDSQ86SQ9 333 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 MSRB3Q8IXL7 192 aa10.73□□□□□ -0.69
VPS52-213ENST00000461743 MEIOBQ8N635 442 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms