RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 PLEKHA6Q9Y2H5 1048 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 CPQQ9Y646 472 aa2.38□□□□□ -2.03
SCFD1-219ENST00000556413 MYH9P35579 1960 aaKnown RBP2.38□□□□□ -2.03
SCFD1-219ENST00000556413 IGF2RP11717 2491 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 ZFYVE26Q68DK2 2539 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 BAHCC1Q9P281 2608 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 TRAV9-2A0A087WT02 112 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 A0A087WV48 116 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 TRAV19A0A0A6YYK7 116 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 TTC26A0AVF1 554 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 MEI4A8MW99 385 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 NEDD8-MDP1E9PL57 170 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 F8VP50 259 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 CASC3O15234 703 aaKnown RBP2.37□□□□□ -2.03
SCFD1-219ENST00000556413 TBCAO75347 108 aaKnown RBP2.37□□□□□ -2.03
SCFD1-219ENST00000556413 TOM1L1O75674 476 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 RHOBTB1O94844 696 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 CLTAP09496 248 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 FAM58BPP0C7Q3 252 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 MBL2P11226 248 aaPredicted RBP2.37□□□□□ -2.03
SCFD1-219ENST00000556413 CCDC130P13994 396 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 GABRG2P18507 467 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 RPA1P27694 616 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 ADORA2BP29275 332 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 TIA1P31483 386 aaKnown RBP eCLIP2.37□□□□□ -2.03
SCFD1-219ENST00000556413 SPRP35270 261 aaPredicted RBP2.37□□□□□ -2.03
SCFD1-219ENST00000556413 PRKCIP41743 596 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 OR3A1P47881 315 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 CASP4P49662 377 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 ATXN3P54252 364 aaPredicted RBP2.37□□□□□ -2.03
SCFD1-219ENST00000556413 SLC12A3P55017 1021 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 TSPY1Q01534 308 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 PDIA5Q14554 519 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 FAM46CQ5VWP2 391 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 TXNRD3NBQ6F5E7 133 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 GALNT17Q6IS24 598 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 KLHL10Q6JEL2 608 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 TRAT1Q6PIZ9 186 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 TPGS1Q6ZTW0 290 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 ITIH5Q86UX2 942 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 BBS7Q8IWZ6 715 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 NELFCDQ8IXH7 590 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 HDDC3Q8N4P3 179 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 FAM184AQ8NB25 1140 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 SAP25Q8TEE9 199 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 SETD7Q8WTS6 366 aaKnown RBP2.37□□□□□ -2.03
SCFD1-219ENST00000556413 NDRG1Q92597 394 aaKnown RBP2.37□□□□□ -2.03
SCFD1-219ENST00000556413 MRPS31Q92665 395 aaKnown RBP2.37□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF799Q96GE5 643 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 ALKBH3Q96Q83 286 aaPredicted RBP2.37□□□□□ -2.03
SCFD1-219ENST00000556413 NUSAP1Q9BXS6 441 aaKnown RBP2.37□□□□□ -2.03
SCFD1-219ENST00000556413 SMYD3Q9H7B4 428 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 C3orf14Q9HBI5 128 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 TSC2P49815 1807 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 FANCMQ8IYD8 2048 aa2.37□□□□□ -2.03
SCFD1-219ENST00000556413 DMXL2Q8TDJ6 3036 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 F5P12259 2224 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 IGHV1OR15-9A0A0B4J2B8 117 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 TEX48A0A1B0GUV7 120 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 VPS37CA5D8V6 355 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-219ENST00000556413 IGLON5A6NGN9 336 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 C5orf52A6NGY3 159 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 FAM47DPA6NHR8 397 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF732B4DXR9 585 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 NPIPA3F8WFD2 350 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 PIRO00625 290 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 PGRMC2O15173 223 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 COCHO43405 550 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 ACSL4O60488 711 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 SDC3O75056 442 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 LRP3O75074 770 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 NOL4O94818 638 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 CALCAP01258 141 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 CENPBP07199 599 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-219ENST00000556413 ADSSP30520 456 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 RPL9P32969 192 aaKnown RBP2.36□□□□□ -2.03
SCFD1-219ENST00000556413 P2RY2P41231 377 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 MEOX2P50222 304 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 NAGLUP54802 743 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 SEMG2Q02383 582 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF33AQ06730 810 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 CCDC173Q0VFZ6 552 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 DNAJC3Q13217 504 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 PDGFRLQ15198 375 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 ZBTB6Q15916 424 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 ZRANB3Q5FWF4 1079 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 FAM91A1Q658Y4 838 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 SPOPLQ6IQ16 392 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 KDM7AQ6ZMT4 941 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF600Q6ZNG1 722 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 LPCAT2Q7L5N7 544 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 METTL23Q86XA0 190 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 TMEM25Q86YD3 366 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 CBWD2Q8IUF1 395 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 GPR65Q8IYL9 337 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 CSGALNACT2Q8N6G5 542 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 ZNF525Q8N782 197 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 CCDC89Q8N998 374 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 LEMD2Q8NC56 503 aa2.36□□□□□ -2.03
SCFD1-219ENST00000556413 SLC26A7Q8TE54 656 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms