RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 PDE9AO76083 593 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 ANP32DO95626 131 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 ESRRAP11474 423 aaPredicted RBP10.79□□□□□ -0.68
VPS52-213ENST00000461743 DCTP40126 519 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 MDH1P40925 334 aaKnown RBP10.79□□□□□ -0.68
VPS52-213ENST00000461743 ATP12AP54707 1039 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 SUMO3P55854 103 aaPredicted RBP10.79□□□□□ -0.68
VPS52-213ENST00000461743 RPS26P62854 115 aaKnown RBP10.79□□□□□ -0.68
VPS52-213ENST00000461743 HPCAP84074 193 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 GUCY1A3Q02108 690 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 CRYZQ08257 329 aaKnown RBP10.79□□□□□ -0.68
VPS52-213ENST00000461743 ZNF630Q2M218 657 aaPredicted RBP10.79□□□□□ -0.68
VPS52-213ENST00000461743 GLYR1Q49A26 553 aaPredicted RBP10.79□□□□□ -0.68
VPS52-213ENST00000461743 FLYWCH1Q4VC44 716 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 AP1ARQ63HQ0 302 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 TMEM211Q6ICI0 200 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 AAGABQ6PD74 315 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 BLOC1S3Q6QNY0 202 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 IFNEQ86WN2 208 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 DOLPP1Q86YN1 238 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 OR2M3Q8NG83 312 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 ZFP90Q8TF47 636 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 TSPEARQ8WU66 669 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 PMM1Q92871 262 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 SPDL1Q96EA4 605 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 CCDC120Q96HB5 630 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 DMRTA2Q96SC8 542 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 PRDM14Q9GZV8 571 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 SLC6A15Q9H2J7 730 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 FLRT3Q9NZU0 649 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 SPRR3Q9UBC9 169 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 DCTN4Q9UJW0 460 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 LIPT1Q9Y234 373 aa10.79□□□□□ -0.68
VPS52-213ENST00000461743 MPDZO75970 2070 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 NBPF19A0A087WUL8 3843 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 A0A096LPI6 279 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 C15orf38-AP3S2A0A0A6YYH1 394 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 NPIPA2E9PIF3 369 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 NPIPA3F8WFD2 350 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 KIAA0513O60268 411 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 VIMP08670 466 aaKnown RBP10.78□□□□□ -0.68
VPS52-213ENST00000461743 ZNF17P17021 662 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 PPIBP23284 216 aaKnown RBP10.78□□□□□ -0.68
VPS52-213ENST00000461743 CHMP24386 653 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 ACVR2AP27037 513 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 DPP4P27487 766 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 CDKN2CP42773 168 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 SMSP52788 366 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 GFRA1P56159 465 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 FADDQ13158 208 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 TOMM20Q15388 145 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 C6orf10Q5SRN2 563 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 LRIF1Q5T3J3 769 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 CCNJQ5T5M9 372 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 VASNQ6EMK4 673 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 TNFAIP8L2Q6P589 184 aaPredicted RBP10.78□□□□□ -0.68
VPS52-213ENST00000461743 ENPP6Q6UWR7 440 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 ZNF621Q6ZSS3 439 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 YTHDF3Q7Z739 585 aaKnown RBP10.78□□□□□ -0.68
VPS52-213ENST00000461743 RNF130Q86XS8 419 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 ZNF808Q8N4W9 903 aaPredicted RBP10.78□□□□□ -0.68
VPS52-213ENST00000461743 TOR1AIP2Q8NFQ8 470 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 OR14L1PQ8NHC6 308 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 RFWD2Q8NHY2 731 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 GTF2H4Q92759 462 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 VPS33AQ96AX1 596 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 C1GALT1C1Q96EU7 318 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 OTUB1Q96FW1 271 aaPredicted RBP10.78□□□□□ -0.68
VPS52-213ENST00000461743 SDF2Q99470 211 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 INPP5KQ9BT40 448 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 TMEM120AQ9BXJ8 343 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 TAS2R10Q9NYW0 307 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 CCDC167Q9P0B6 97 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 KLHL14Q9P2G3 628 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 SH3BGRL2Q9UJC5 107 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 FBXL2Q9UKC9 423 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 ACAD8Q9UKU7 415 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 GMEB1Q9Y692 573 aa10.78□□□□□ -0.68
VPS52-213ENST00000461743 A0A1W2PP18 115 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 C7orf72A4D263 438 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 HMGN4O00479 90 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 NR5A2O00482 541 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 OR12D1P0DN82 309 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 HOXB9P17482 250 aaPredicted RBP10.77□□□□□ -0.69
VPS52-213ENST00000461743 NCF2P19878 526 aaPredicted RBP10.77□□□□□ -0.69
VPS52-213ENST00000461743 ARFIP2P53365 341 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 STX5Q13190 355 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 GNA13Q14344 377 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 ZNF141Q15928 474 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 GXYLT1Q4G148 440 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 AGKQ53H12 422 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 KLHL26Q53HC5 615 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 EIPR1Q53HC9 387 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 EMC4Q5J8M3 183 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 C1orf185Q5T7R7 199 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 XKRXQ6PP77 449 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 APOOLQ6UXV4 268 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 DNAJC14Q6Y2X3 702 aaPredicted RBP10.77□□□□□ -0.69
VPS52-213ENST00000461743 B3GNT6Q6ZMB0 384 aa10.77□□□□□ -0.69
VPS52-213ENST00000461743 ZAR1Q86SH2 424 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms