RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 RPS6KA4O75676 772 aa25■■□□□ 1.59
CLN3-250ENST00000636839 SURF6O75683 361 aaKnown RBP25■■□□□ 1.59
CLN3-250ENST00000636839 ZNF34Q8IZ26 560 aa25■■□□□ 1.59
CLN3-250ENST00000636839 KLHDC4Q8TBB5 520 aa25■■□□□ 1.59
CLN3-250ENST00000636839 NUP98P52948 1817 aa24.99■■□□□ 1.59
CLN3-250ENST00000636839 APBA3O96018 575 aa24.99■■□□□ 1.59
CLN3-250ENST00000636839 FOXO4P98177 505 aa24.99■■□□□ 1.59
CLN3-250ENST00000636839 OTUD7AQ8TE49 926 aaPredicted RBP24.99■■□□□ 1.59
CLN3-250ENST00000636839 SRP68Q9UHB9 627 aaKnown RBP24.99■■□□□ 1.59
CLN3-250ENST00000636839 TAF1LQ8IZX4 1826 aa24.99■■□□□ 1.59
CLN3-250ENST00000636839 HDAC5Q9UQL6 1122 aa24.98■■□□□ 1.59
CLN3-250ENST00000636839 FAM177BA6PVY3 158 aa24.98■■□□□ 1.59
CLN3-250ENST00000636839 PHF14O94880 888 aa24.98■■□□□ 1.59
CLN3-250ENST00000636839 HSP90AB3PQ58FF7 597 aa24.98■■□□□ 1.59
CLN3-250ENST00000636839 TXNRD1Q16881 649 aa24.97■■□□□ 1.59
CLN3-250ENST00000636839 LMBR1LQ6UX01 489 aa24.96■■□□□ 1.59
CLN3-250ENST00000636839 RTCBQ9Y3I0 505 aaKnown RBP24.96■■□□□ 1.59
CLN3-250ENST00000636839 RABL6Q3YEC7 729 aaPredicted RBP24.96■■□□□ 1.59
CLN3-250ENST00000636839 SUSD4Q5VX71 490 aa24.96■■□□□ 1.59
CLN3-250ENST00000636839 ZBTB38Q8NAP3 1195 aaPredicted RBP24.96■■□□□ 1.59
CLN3-250ENST00000636839 ARHGEF1Q92888 912 aaKnown RBP24.96■■□□□ 1.59
CLN3-250ENST00000636839 BCL2L12Q9HB09 334 aa24.96■■□□□ 1.59
CLN3-250ENST00000636839 C4BP0C0L5 1744 aa24.96■■□□□ 1.59
CLN3-250ENST00000636839 PCCAP05165 728 aaPredicted RBP24.95■■□□□ 1.58
CLN3-250ENST00000636839 USPL1Q5W0Q7 1092 aa24.95■■□□□ 1.58
CLN3-250ENST00000636839 AK7Q96M32 723 aa24.95■■□□□ 1.58
CLN3-250ENST00000636839 TRMT112Q9UI30 125 aaKnown RBP24.95■■□□□ 1.58
CLN3-250ENST00000636839 SLC27A3Q5K4L6 730 aa24.94■■□□□ 1.58
CLN3-250ENST00000636839 NIP7Q9Y221 180 aaKnown RBP eCLIP24.94■■□□□ 1.58
CLN3-250ENST00000636839 CCDC85AQ96PX6 553 aaPredicted RBP24.93■■□□□ 1.58
CLN3-250ENST00000636839 IL1RAPL2Q9NP60 686 aa24.93■■□□□ 1.58
CLN3-250ENST00000636839 CHMP3Q9Y3E7 222 aa24.93■■□□□ 1.58
CLN3-250ENST00000636839 SIL1Q9H173 461 aa24.93■■□□□ 1.58
CLN3-250ENST00000636839 RFX5P48382 616 aaPredicted RBP24.92■■□□□ 1.58
CLN3-250ENST00000636839 BICDL1Q6ZP65 573 aa24.92■■□□□ 1.58
CLN3-250ENST00000636839 LRRCC1Q9C099 1032 aa24.92■■□□□ 1.58
CLN3-250ENST00000636839 NARFQ9UHQ1 456 aa24.92■■□□□ 1.58
CLN3-250ENST00000636839 NOP58Q9Y2X3 529 aaKnown RBP24.92■■□□□ 1.58
CLN3-250ENST00000636839 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.92■■□□□ 1.58
CLN3-250ENST00000636839 ANKRD36CQ5JPF3 1778 aa24.92■■□□□ 1.58
CLN3-250ENST00000636839 PLSCR1O15162 318 aa24.91■■□□□ 1.58
CLN3-250ENST00000636839 ILDR1Q86SU0 546 aaPredicted RBP24.91■■□□□ 1.58
CLN3-250ENST00000636839 PLEKHM2Q8IWE5 1019 aa24.91■■□□□ 1.58
CLN3-250ENST00000636839 ZBTB47Q9UFB7 747 aaPredicted RBP24.91■■□□□ 1.58
CLN3-250ENST00000636839 TRAPPC3LQ5T215 181 aa24.9■■□□□ 1.58
CLN3-250ENST00000636839 TBC1D9BQ66K14 1250 aa24.9■■□□□ 1.58
CLN3-250ENST00000636839 RHPN1Q8TCX5 695 aa24.9■■□□□ 1.58
CLN3-250ENST00000636839 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.89■■□□□ 1.57
CLN3-250ENST00000636839 PTPN12Q05209 780 aaKnown RBP24.89■■□□□ 1.57
CLN3-250ENST00000636839 CLEC4GQ6UXB4 293 aa24.89■■□□□ 1.57
CLN3-250ENST00000636839 IRS4O14654 1257 aaPredicted RBP24.88■■□□□ 1.57
CLN3-250ENST00000636839 ZPR1O75312 459 aa24.88■■□□□ 1.57
CLN3-250ENST00000636839 OS9Q13438 667 aaPredicted RBP24.88■■□□□ 1.57
CLN3-250ENST00000636839 NUTM1Q86Y26 1132 aa24.88■■□□□ 1.57
CLN3-250ENST00000636839 ZNF652Q9Y2D9 606 aa24.88■■□□□ 1.57
CLN3-250ENST00000636839 HCLS1P14317 486 aaPredicted RBP24.88■■□□□ 1.57
CLN3-250ENST00000636839 TSHZ3Q63HK5 1081 aa24.88■■□□□ 1.57
CLN3-250ENST00000636839 UTP14AQ9BVJ6 771 aaKnown RBP24.88■■□□□ 1.57
CLN3-250ENST00000636839 RAB11FIP3O75154 756 aa24.87■■□□□ 1.57
CLN3-250ENST00000636839 RFC4P35249 363 aa24.87■■□□□ 1.57
CLN3-250ENST00000636839 C8orf34Q49A92 452 aa24.87■■□□□ 1.57
CLN3-250ENST00000636839 ZNF594Q96JF6 807 aaPredicted RBP24.87■■□□□ 1.57
CLN3-250ENST00000636839 BCORQ6W2J9 1755 aa24.87■■□□□ 1.57
CLN3-250ENST00000636839 CDHR2Q9BYE9 1310 aa24.86■■□□□ 1.57
CLN3-250ENST00000636839 SASH1O94885 1247 aa24.86■■□□□ 1.57
CLN3-250ENST00000636839 ZNF827Q17R98 1081 aa24.86■■□□□ 1.57
CLN3-250ENST00000636839 BACH2Q9BYV9 841 aa24.86■■□□□ 1.57
CLN3-250ENST00000636839 NTSR2O95665 410 aa24.86■■□□□ 1.57
CLN3-250ENST00000636839 FAM161AQ3B820 660 aa24.86■■□□□ 1.57
CLN3-250ENST00000636839 PLA2G12BQ9BX93 195 aa24.86■■□□□ 1.57
CLN3-250ENST00000636839 KIF1BPQ96EK5 621 aa24.85■■□□□ 1.57
CLN3-250ENST00000636839 COPRSQ9NQ92 184 aa24.85■■□□□ 1.57
CLN3-250ENST00000636839 USP42Q9H9J4 1324 aaKnown RBP24.85■■□□□ 1.57
CLN3-250ENST00000636839 G3BP1Q13283 466 aaKnown RBP eCLIP24.85■■□□□ 1.57
CLN3-250ENST00000636839 PARP10Q53GL7 1025 aa24.85■■□□□ 1.57
CLN3-250ENST00000636839 SH3TC1Q8TE82 1336 aa24.84■■□□□ 1.57
CLN3-250ENST00000636839 CSF1RP07333 972 aa24.84■■□□□ 1.57
CLN3-250ENST00000636839 TTLL11Q8NHH1 800 aa24.84■■□□□ 1.57
CLN3-250ENST00000636839 TNS1Q9HBL0 1735 aaKnown RBP24.83■■□□□ 1.57
CLN3-250ENST00000636839 EN1Q05925 392 aaPredicted RBP24.83■■□□□ 1.56
CLN3-250ENST00000636839 HSP90AB4PQ58FF6 505 aa24.83■■□□□ 1.56
CLN3-250ENST00000636839 GREM2Q9H772 168 aa24.83■■□□□ 1.56
CLN3-250ENST00000636839 SALL3Q9BXA9 1300 aa24.82■■□□□ 1.56
CLN3-250ENST00000636839 SCN7AQ01118 1682 aa24.82■■□□□ 1.56
CLN3-250ENST00000636839 CTSWP56202 376 aa24.82■■□□□ 1.56
CLN3-250ENST00000636839 UBR3Q6ZT12 1888 aa24.82■■□□□ 1.56
CLN3-250ENST00000636839 C4AP0C0L4 1744 aa24.82■■□□□ 1.56
CLN3-250ENST00000636839 EZH2Q15910 746 aaKnown RBP24.81■■□□□ 1.56
CLN3-250ENST00000636839 ERFEQ4G0M1 354 aa24.81■■□□□ 1.56
CLN3-250ENST00000636839 CCDC24Q8N4L8 307 aa24.81■■□□□ 1.56
CLN3-250ENST00000636839 PDE8AO60658 829 aa24.81■■□□□ 1.56
CLN3-250ENST00000636839 GSPT1P15170 499 aaKnown RBP24.81■■□□□ 1.56
CLN3-250ENST00000636839 PUS3Q9BZE2 481 aaKnown RBP24.81■■□□□ 1.56
CLN3-250ENST00000636839 PDE1AP54750 535 aa24.8■■□□□ 1.56
CLN3-250ENST00000636839 LRRC24Q50LG9 513 aa24.8■■□□□ 1.56
CLN3-250ENST00000636839 AKT1S1Q96B36 256 aa24.8■■□□□ 1.56
CLN3-250ENST00000636839 SETDB2Q96T68 719 aa24.8■■□□□ 1.56
CLN3-250ENST00000636839 TFCP2L1Q9NZI6 479 aa24.8■■□□□ 1.56
CLN3-250ENST00000636839 RBM19Q9Y4C8 960 aaKnown RBP24.79■■□□□ 1.56
CLN3-250ENST00000636839 ADRA2BP18089 450 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms