RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 KIF6Q6ZMV9 814 aa20.76■□□□□ 0.91
PDLIM3-213ENST00000629667 WBP1LQ9NX94 342 aa20.76■□□□□ 0.91
PDLIM3-213ENST00000629667 GJA3Q9Y6H8 435 aa20.76■□□□□ 0.91
PDLIM3-213ENST00000629667 KDM3BQ7LBC6 1761 aa20.76■□□□□ 0.91
PDLIM3-213ENST00000629667 LMOD1P29536 600 aaPredicted RBP20.75■□□□□ 0.91
PDLIM3-213ENST00000629667 PNISRQ8TF01 805 aaKnown RBP20.75■□□□□ 0.91
PDLIM3-213ENST00000629667 ABT1Q9ULW3 272 aaKnown RBP20.75■□□□□ 0.91
PDLIM3-213ENST00000629667 RRP7AQ9Y3A4 280 aaKnown RBP20.75■□□□□ 0.91
PDLIM3-213ENST00000629667 SNED1Q8TER0 1413 aa20.75■□□□□ 0.91
PDLIM3-213ENST00000629667 MAP3K15Q6ZN16 1313 aa20.75■□□□□ 0.91
PDLIM3-213ENST00000629667 LBX1P52954 281 aa20.74■□□□□ 0.91
PDLIM3-213ENST00000629667 GPTP24298 496 aa20.73■□□□□ 0.91
PDLIM3-213ENST00000629667 GRIPAP1Q4V328 841 aa20.73■□□□□ 0.91
PDLIM3-213ENST00000629667 WDR33Q9C0J8 1336 aaKnown RBP20.73■□□□□ 0.91
PDLIM3-213ENST00000629667 MYL6BP14649 208 aa20.72■□□□□ 0.91
PDLIM3-213ENST00000629667 HOXA10P31260 410 aaPredicted RBP20.72■□□□□ 0.91
PDLIM3-213ENST00000629667 MAP2K1Q02750 393 aaPredicted RBP20.72■□□□□ 0.91
PDLIM3-213ENST00000629667 TTLL7Q6ZT98 887 aa20.72■□□□□ 0.91
PDLIM3-213ENST00000629667 LARGE2Q8N3Y3 721 aa20.72■□□□□ 0.91
PDLIM3-213ENST00000629667 DDX21Q9NR30 783 aaKnown RBP eCLIP20.72■□□□□ 0.91
PDLIM3-213ENST00000629667 LTBP1Q14766 1721 aa20.72■□□□□ 0.91
PDLIM3-213ENST00000629667 RIC1Q4ADV7 1423 aa20.71■□□□□ 0.91
PDLIM3-213ENST00000629667 COL4A5P29400 1685 aa20.71■□□□□ 0.91
PDLIM3-213ENST00000629667 RBM17Q96I25 401 aaKnown RBP20.71■□□□□ 0.91
PDLIM3-213ENST00000629667 ZBTB3Q9H5J0 574 aa20.71■□□□□ 0.91
PDLIM3-213ENST00000629667 IBTKQ9P2D0 1353 aaPredicted RBP20.71■□□□□ 0.91
PDLIM3-213ENST00000629667 TCERG1O14776 1098 aaKnown RBP20.7■□□□□ 0.9
PDLIM3-213ENST00000629667 EIF4A1P60842 406 aaKnown RBP20.7■□□□□ 0.9
PDLIM3-213ENST00000629667 SUSD4Q5VX71 490 aa20.7■□□□□ 0.9
PDLIM3-213ENST00000629667 CRAMP1Q96RY5 1269 aa20.7■□□□□ 0.9
PDLIM3-213ENST00000629667 TRPM7Q96QT4 1865 aa20.7■□□□□ 0.9
PDLIM3-213ENST00000629667 UBN2Q6ZU65 1347 aa20.7■□□□□ 0.9
PDLIM3-213ENST00000629667 PPEF1O14829 653 aaPredicted RBP20.69■□□□□ 0.9
PDLIM3-213ENST00000629667 SCNN1DP51172 638 aa20.69■□□□□ 0.9
PDLIM3-213ENST00000629667 TMX4Q9H1E5 349 aaPredicted RBP20.69■□□□□ 0.9
PDLIM3-213ENST00000629667 HSPA8P11142 646 aaKnown RBP20.68■□□□□ 0.9
PDLIM3-213ENST00000629667 EPS15P42566 896 aa20.68■□□□□ 0.9
PDLIM3-213ENST00000629667 PAXIP1Q6ZW49 1069 aaPredicted RBP20.68■□□□□ 0.9
PDLIM3-213ENST00000629667 NIM1KQ8IY84 436 aa20.68■□□□□ 0.9
PDLIM3-213ENST00000629667 USP50Q70EL3 339 aaPredicted RBP20.67■□□□□ 0.9
PDLIM3-213ENST00000629667 PPP1R42Q7Z4L9 355 aa20.67■□□□□ 0.9
PDLIM3-213ENST00000629667 ZNF34Q8IZ26 560 aa20.67■□□□□ 0.9
PDLIM3-213ENST00000629667 PPIP5K2O43314 1243 aa20.66■□□□□ 0.9
PDLIM3-213ENST00000629667 NTSR2O95665 410 aa20.66■□□□□ 0.9
PDLIM3-213ENST00000629667 ECE1P42892 770 aa20.66■□□□□ 0.9
PDLIM3-213ENST00000629667 GIGYF2Q6Y7W6 1299 aaKnown RBP20.66■□□□□ 0.9
PDLIM3-213ENST00000629667 NLRP3Q96P20 1036 aa20.66■□□□□ 0.9
PDLIM3-213ENST00000629667 THUMPD2Q9BTF0 503 aaKnown RBP20.66■□□□□ 0.9
PDLIM3-213ENST00000629667 FMR1Q06787 632 aaKnown RBP eCLIP20.65■□□□□ 0.9
PDLIM3-213ENST00000629667 GRM1Q13255 1194 aa20.65■□□□□ 0.9
PDLIM3-213ENST00000629667 NFE2L2Q16236 605 aa20.65■□□□□ 0.9
PDLIM3-213ENST00000629667 CAPNS2Q96L46 248 aa20.65■□□□□ 0.9
PDLIM3-213ENST00000629667 BEGAINQ9BUH8 593 aa20.65■□□□□ 0.9
PDLIM3-213ENST00000629667 ERBB4Q15303 1308 aa20.64■□□□□ 0.89
PDLIM3-213ENST00000629667 PARP10Q53GL7 1025 aa20.64■□□□□ 0.89
PDLIM3-213ENST00000629667 SLC51AQ86UW1 340 aa20.64■□□□□ 0.89
PDLIM3-213ENST00000629667 PLEKHF1Q96S99 279 aa20.64■□□□□ 0.89
PDLIM3-213ENST00000629667 THSD7BQ9C0I4 1608 aa20.64■□□□□ 0.89
PDLIM3-213ENST00000629667 AOC3Q16853 763 aa20.63■□□□□ 0.89
PDLIM3-213ENST00000629667 C3orf67Q6ZVT6 689 aa20.63■□□□□ 0.89
PDLIM3-213ENST00000629667 ABHD8Q96I13 439 aa20.63■□□□□ 0.89
PDLIM3-213ENST00000629667 GPR101Q96P66 508 aaPredicted RBP20.63■□□□□ 0.89
PDLIM3-213ENST00000629667 VPS33BQ9H267 617 aa20.63■□□□□ 0.89
PDLIM3-213ENST00000629667 PNNQ9H307 717 aaKnown RBP20.63■□□□□ 0.89
PDLIM3-213ENST00000629667 ATP6V0A2Q9Y487 856 aa20.63■□□□□ 0.89
PDLIM3-213ENST00000629667 MAPK8IP3Q9UPT6 1336 aa20.62■□□□□ 0.89
PDLIM3-213ENST00000629667 TRAF5O00463 557 aa20.62■□□□□ 0.89
PDLIM3-213ENST00000629667 CST9Q5W186 159 aa20.62■□□□□ 0.89
PDLIM3-213ENST00000629667 CYP4F22Q6NT55 531 aa20.62■□□□□ 0.89
PDLIM3-213ENST00000629667 UTP14AQ9BVJ6 771 aaKnown RBP20.62■□□□□ 0.89
PDLIM3-213ENST00000629667 ADARB2Q9NS39 739 aaKnown RBP20.62■□□□□ 0.89
PDLIM3-213ENST00000629667 GPRC5DQ9NZD1 345 aa20.62■□□□□ 0.89
PDLIM3-213ENST00000629667 SUPT20HQ8NEM7 779 aa20.61■□□□□ 0.89
PDLIM3-213ENST00000629667 TSPYL4Q9UJ04 414 aa20.61■□□□□ 0.89
PDLIM3-213ENST00000629667 EIF2S2P20042 333 aaKnown RBP20.6■□□□□ 0.89
PDLIM3-213ENST00000629667 SLC10A5Q5PT55 438 aa20.6■□□□□ 0.89
PDLIM3-213ENST00000629667 ZNRF3Q9ULT6 936 aa20.6■□□□□ 0.89
PDLIM3-213ENST00000629667 TLL2Q9Y6L7 1015 aa20.6■□□□□ 0.89
PDLIM3-213ENST00000629667 LAMB2P55268 1798 aa20.59■□□□□ 0.89
PDLIM3-213ENST00000629667 ANKRD36CQ5JPF3 1778 aa20.59■□□□□ 0.89
PDLIM3-213ENST00000629667 ABCC4O15439 1325 aa20.59■□□□□ 0.89
PDLIM3-213ENST00000629667 CXCL9Q07325 125 aa20.59■□□□□ 0.89
PDLIM3-213ENST00000629667 DPP8Q6V1X1 898 aaPredicted RBP20.58■□□□□ 0.89
PDLIM3-213ENST00000629667 BBOX1O75936 387 aa20.57■□□□□ 0.88
PDLIM3-213ENST00000629667 LRP10Q7Z4F1 713 aa20.57■□□□□ 0.88
PDLIM3-213ENST00000629667 RTFDC1Q9BY42 306 aaPredicted RBP20.57■□□□□ 0.88
PDLIM3-213ENST00000629667 CELF2O95319 508 aaKnown RBP20.56■□□□□ 0.88
PDLIM3-213ENST00000629667 MAP2K2P36507 400 aa20.56■□□□□ 0.88
PDLIM3-213ENST00000629667 GMPSP49915 693 aaPredicted RBP20.56■□□□□ 0.88
PDLIM3-213ENST00000629667 PDIA6Q15084 440 aa20.56■□□□□ 0.88
PDLIM3-213ENST00000629667 HSP90AB3PQ58FF7 597 aa20.56■□□□□ 0.88
PDLIM3-213ENST00000629667 CIAPIN1Q6FI81 312 aa20.56■□□□□ 0.88
PDLIM3-213ENST00000629667 SP8Q8IXZ3 490 aa20.56■□□□□ 0.88
PDLIM3-213ENST00000629667 MPNDQ8N594 471 aa20.56■□□□□ 0.88
PDLIM3-213ENST00000629667 BCL2L13Q9BXK5 485 aa20.56■□□□□ 0.88
PDLIM3-213ENST00000629667 AOC2O75106 756 aa20.55■□□□□ 0.88
PDLIM3-213ENST00000629667 ANXA1P04083 346 aa20.55■□□□□ 0.88
PDLIM3-213ENST00000629667 PROSER3Q2NL68 480 aa20.55■□□□□ 0.88
PDLIM3-213ENST00000629667 SAPCD2Q86UD0 394 aa20.55■□□□□ 0.88
PDLIM3-213ENST00000629667 CDHR2Q9BYE9 1310 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms