RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 KSR2Q6VAB6 950 aa25.72■■□□□ 1.71
SSBP4-210ENST00000601444 ANKRD36CQ5JPF3 1778 aa25.72■■□□□ 1.71
SSBP4-210ENST00000601444 IBTKQ9P2D0 1353 aaPredicted RBP25.71■■□□□ 1.71
SSBP4-210ENST00000601444 METTL22Q9BUU2 404 aaPredicted RBP25.7■■□□□ 1.7
SSBP4-210ENST00000601444 KLRG2A4D1S0 409 aaPredicted RBP25.69■■□□□ 1.7
SSBP4-210ENST00000601444 SRGNP10124 158 aa25.69■■□□□ 1.7
SSBP4-210ENST00000601444 DALRD3Q5D0E6 543 aaKnown RBP25.69■■□□□ 1.7
SSBP4-210ENST00000601444 ZNF622Q969S3 477 aaKnown RBP eCLIP25.69■■□□□ 1.7
SSBP4-210ENST00000601444 TRMT112Q9UI30 125 aaKnown RBP25.69■■□□□ 1.7
SSBP4-210ENST00000601444 COL11A2P13942 1736 aaPredicted RBP25.68■■□□□ 1.7
SSBP4-210ENST00000601444 BRCA1P38398 1863 aaKnown RBP25.68■■□□□ 1.7
SSBP4-210ENST00000601444 FKBP5Q13451 457 aaPredicted RBP25.68■■□□□ 1.7
SSBP4-210ENST00000601444 C3orf67Q6ZVT6 689 aa25.68■■□□□ 1.7
SSBP4-210ENST00000601444 GRIN3BO60391 1043 aa25.67■■□□□ 1.7
SSBP4-210ENST00000601444 TRIM28Q13263 835 aaKnown RBP25.67■■□□□ 1.7
SSBP4-210ENST00000601444 TNRC6CQ9HCJ0 1690 aaKnown RBP25.67■■□□□ 1.7
SSBP4-210ENST00000601444 RTL5Q5HYW3 569 aaPredicted RBP25.66■■□□□ 1.7
SSBP4-210ENST00000601444 MRPL50Q8N5N7 158 aaKnown RBP25.66■■□□□ 1.7
SSBP4-210ENST00000601444 TTLL6Q8N841 843 aa25.66■■□□□ 1.7
SSBP4-210ENST00000601444 SSH1Q8WYL5 1049 aa25.66■■□□□ 1.7
SSBP4-210ENST00000601444 FAM89AQ96GI7 184 aa25.66■■□□□ 1.7
SSBP4-210ENST00000601444 BCL2L13Q9BXK5 485 aa25.66■■□□□ 1.7
SSBP4-210ENST00000601444 PDZRN3Q9UPQ7 1066 aa25.66■■□□□ 1.7
SSBP4-210ENST00000601444 IGKV5-2P06315 115 aa25.65■■□□□ 1.7
SSBP4-210ENST00000601444 HCLS1P14317 486 aaPredicted RBP25.65■■□□□ 1.7
SSBP4-210ENST00000601444 SLC10A5Q5PT55 438 aa25.65■■□□□ 1.7
SSBP4-210ENST00000601444 DLEC1Q9Y238 1755 aa25.64■■□□□ 1.7
SSBP4-210ENST00000601444 F6X3S4 739 aa25.64■■□□□ 1.7
SSBP4-210ENST00000601444 JARID2Q92833 1246 aaPredicted RBP25.64■■□□□ 1.7
SSBP4-210ENST00000601444 MASTLQ96GX5 879 aa25.64■■□□□ 1.7
SSBP4-210ENST00000601444 ZBED9Q6R2W3 1325 aa25.63■■□□□ 1.69
SSBP4-210ENST00000601444 SH3TC1Q8TE82 1336 aa25.63■■□□□ 1.69
SSBP4-210ENST00000601444 CWF19L2Q2TBE0 894 aaKnown RBP25.63■■□□□ 1.69
SSBP4-210ENST00000601444 STYK1Q6J9G0 422 aa25.63■■□□□ 1.69
SSBP4-210ENST00000601444 NPR1P16066 1061 aa25.62■■□□□ 1.69
SSBP4-210ENST00000601444 CRY2Q49AN0 593 aa25.62■■□□□ 1.69
SSBP4-210ENST00000601444 CCDC191Q8NCU4 936 aa25.62■■□□□ 1.69
SSBP4-210ENST00000601444 DNAAF4Q8WXU2 420 aa25.62■■□□□ 1.69
SSBP4-210ENST00000601444 ZNF219Q9P2Y4 722 aaPredicted RBP25.62■■□□□ 1.69
SSBP4-210ENST00000601444 RIC1Q4ADV7 1423 aa25.62■■□□□ 1.69
SSBP4-210ENST00000601444 RNF123Q5XPI4 1314 aa25.62■■□□□ 1.69
SSBP4-210ENST00000601444 ARHGAP27Q6ZUM4 889 aa25.61■■□□□ 1.69
SSBP4-210ENST00000601444 CWC25Q9NXE8 425 aaPredicted RBP25.61■■□□□ 1.69
SSBP4-210ENST00000601444 NEXNQ0ZGT2 675 aa25.6■■□□□ 1.69
SSBP4-210ENST00000601444 CNKSR1Q969H4 720 aa25.6■■□□□ 1.69
SSBP4-210ENST00000601444 NLRP3Q96P20 1036 aa25.6■■□□□ 1.69
SSBP4-210ENST00000601444 NEURL1BA8MQ27 555 aa25.59■■□□□ 1.69
SSBP4-210ENST00000601444 CT47B1P0C2W7 299 aaPredicted RBP25.59■■□□□ 1.69
SSBP4-210ENST00000601444 ALDH1L2Q3SY69 923 aa25.59■■□□□ 1.69
SSBP4-210ENST00000601444 PRPF40BQ6NWY9 871 aaKnown RBP25.59■■□□□ 1.69
SSBP4-210ENST00000601444 ZBTB38Q8NAP3 1195 aaPredicted RBP25.59■■□□□ 1.69
SSBP4-210ENST00000601444 CACNA1FO60840 1977 aa25.58■■□□□ 1.69
SSBP4-210ENST00000601444 C21orf2O43822 256 aa25.58■■□□□ 1.69
SSBP4-210ENST00000601444 SMC4Q9NTJ3 1288 aa25.58■■□□□ 1.69
SSBP4-210ENST00000601444 IRS4O14654 1257 aaPredicted RBP25.57■■□□□ 1.68
SSBP4-210ENST00000601444 RPGRQ92834 1020 aaKnown RBP25.57■■□□□ 1.68
SSBP4-210ENST00000601444 ARFGEF1Q9Y6D6 1849 aa25.56■■□□□ 1.68
SSBP4-210ENST00000601444 PCCAP05165 728 aaPredicted RBP25.56■■□□□ 1.68
SSBP4-210ENST00000601444 SLX4Q8IY92 1834 aa25.56■■□□□ 1.68
SSBP4-210ENST00000601444 HOXA10P31260 410 aaPredicted RBP25.55■■□□□ 1.68
SSBP4-210ENST00000601444 RARSP54136 660 aaKnown RBP25.55■■□□□ 1.68
SSBP4-210ENST00000601444 BEND3Q5T5X7 828 aa25.55■■□□□ 1.68
SSBP4-210ENST00000601444 OLFM4Q6UX06 510 aa25.55■■□□□ 1.68
SSBP4-210ENST00000601444 LINS1Q8NG48 757 aa25.55■■□□□ 1.68
SSBP4-210ENST00000601444 YY1P25490 414 aa25.54■■□□□ 1.68
SSBP4-210ENST00000601444 ALDH1B1P30837 517 aa25.54■■□□□ 1.68
SSBP4-210ENST00000601444 SLC4A10Q6U841 1118 aa25.54■■□□□ 1.68
SSBP4-210ENST00000601444 SLC51AQ86UW1 340 aa25.54■■□□□ 1.68
SSBP4-210ENST00000601444 C7orf43Q8WVR3 580 aa25.54■■□□□ 1.68
SSBP4-210ENST00000601444 RBM17Q96I25 401 aaKnown RBP25.54■■□□□ 1.68
SSBP4-210ENST00000601444 DDX60Q8IY21 1712 aaKnown RBP25.54■■□□□ 1.68
SSBP4-210ENST00000601444 GCKRQ14397 625 aa25.53■■□□□ 1.68
SSBP4-210ENST00000601444 LAMB2P55268 1798 aa25.52■■□□□ 1.68
SSBP4-210ENST00000601444 CACNA1SQ13698 1873 aa25.52■■□□□ 1.68
SSBP4-210ENST00000601444 RASSF7Q02833 373 aa25.52■■□□□ 1.68
SSBP4-210ENST00000601444 CRAMP1Q96RY5 1269 aa25.52■■□□□ 1.68
SSBP4-210ENST00000601444 H7C1W4 665 aa25.51■■□□□ 1.67
SSBP4-210ENST00000601444 NOB1Q9ULX3 412 aaKnown RBP25.51■■□□□ 1.67
SSBP4-210ENST00000601444 PTPRCP08575 1304 aa25.51■■□□□ 1.67
SSBP4-210ENST00000601444 ABCC4O15439 1325 aa25.5■■□□□ 1.67
SSBP4-210ENST00000601444 SF3B3Q15393 1217 aaKnown RBP25.5■■□□□ 1.67
SSBP4-210ENST00000601444 UBE3BQ7Z3V4 1068 aa25.5■■□□□ 1.67
SSBP4-210ENST00000601444 CDHR2Q9BYE9 1310 aa25.49■■□□□ 1.67
SSBP4-210ENST00000601444 NFKBIEO00221 500 aa25.49■■□□□ 1.67
SSBP4-210ENST00000601444 PRELPP51888 382 aa25.49■■□□□ 1.67
SSBP4-210ENST00000601444 PDE8AO60658 829 aa25.48■■□□□ 1.67
SSBP4-210ENST00000601444 BCAR3O75815 825 aa25.48■■□□□ 1.67
SSBP4-210ENST00000601444 BRPF1P55201 1214 aaPredicted RBP25.48■■□□□ 1.67
SSBP4-210ENST00000601444 CASP7P55210 303 aa25.48■■□□□ 1.67
SSBP4-210ENST00000601444 CCDC85AQ96PX6 553 aaPredicted RBP25.48■■□□□ 1.67
SSBP4-210ENST00000601444 CHD4Q14839 1912 aa25.47■■□□□ 1.67
SSBP4-210ENST00000601444 DDX46Q7L014 1031 aaKnown RBP25.47■■□□□ 1.67
SSBP4-210ENST00000601444 SRCIN1Q9C0H9 1055 aa25.47■■□□□ 1.67
SSBP4-210ENST00000601444 PPEF1O14829 653 aaPredicted RBP25.46■■□□□ 1.67
SSBP4-210ENST00000601444 COL4A1P02462 1669 aa25.45■■□□□ 1.67
SSBP4-210ENST00000601444 SEC31BQ9NQW1 1179 aa25.45■■□□□ 1.66
SSBP4-210ENST00000601444 ALDH1L1O75891 902 aa25.44■■□□□ 1.66
SSBP4-210ENST00000601444 GRAPQ13588 217 aa25.44■■□□□ 1.66
SSBP4-210ENST00000601444 CCDC93Q567U6 631 aa25.44■■□□□ 1.66
SSBP4-210ENST00000601444 C9orf131Q5VYM1 1079 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms