RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 CHD4Q14839 1912 aa25.04■■□□□ 1.6
SHKBP1-221ENST00000599833 SLX4Q8IY92 1834 aa25.03■■□□□ 1.6
SHKBP1-221ENST00000599833 SRGNP10124 158 aa25.03■■□□□ 1.6
SHKBP1-221ENST00000599833 PDE6BP35913 854 aa25.03■■□□□ 1.6
SHKBP1-221ENST00000599833 GPR162Q16538 588 aa25.03■■□□□ 1.6
SHKBP1-221ENST00000599833 CRY2Q49AN0 593 aa25.03■■□□□ 1.6
SHKBP1-221ENST00000599833 C3orf67Q6ZVT6 689 aa25.03■■□□□ 1.6
SHKBP1-221ENST00000599833 RIC3Q7Z5B4 369 aa25.03■■□□□ 1.6
SHKBP1-221ENST00000599833 METTL22Q9BUU2 404 aaPredicted RBP25.03■■□□□ 1.6
SHKBP1-221ENST00000599833 MAP3K2Q9Y2U5 619 aa25.03■■□□□ 1.6
SHKBP1-221ENST00000599833 IGKV5-2P06315 115 aa25.02■■□□□ 1.6
SHKBP1-221ENST00000599833 SLC10A5Q5PT55 438 aa25.02■■□□□ 1.6
SHKBP1-221ENST00000599833 MRPL50Q8N5N7 158 aaKnown RBP25.02■■□□□ 1.6
SHKBP1-221ENST00000599833 UTP14AQ9BVJ6 771 aaKnown RBP25.02■■□□□ 1.6
SHKBP1-221ENST00000599833 PIM2Q9P1W9 311 aa25.02■■□□□ 1.6
SHKBP1-221ENST00000599833 RNF123Q5XPI4 1314 aa25.02■■□□□ 1.6
SHKBP1-221ENST00000599833 PPP1R42Q7Z4L9 355 aa25.01■■□□□ 1.59
SHKBP1-221ENST00000599833 ZNF428Q96B54 188 aa25.01■■□□□ 1.59
SHKBP1-221ENST00000599833 H0YIN7 160 aa25■■□□□ 1.59
SHKBP1-221ENST00000599833 DDX58O95786 925 aaKnown RBP25■■□□□ 1.59
SHKBP1-221ENST00000599833 SSH1Q8WYL5 1049 aa25■■□□□ 1.59
SHKBP1-221ENST00000599833 MYD88Q99836 296 aa25■■□□□ 1.59
SHKBP1-221ENST00000599833 PDZRN3Q9UPQ7 1066 aa25■■□□□ 1.59
SHKBP1-221ENST00000599833 PELP1Q8IZL8 1130 aaKnown RBP24.99■■□□□ 1.59
SHKBP1-221ENST00000599833 BCS1LQ9Y276 419 aa24.98■■□□□ 1.59
SHKBP1-221ENST00000599833 CT47B1P0C2W7 299 aaPredicted RBP24.97■■□□□ 1.59
SHKBP1-221ENST00000599833 DALRD3Q5D0E6 543 aaKnown RBP24.97■■□□□ 1.59
SHKBP1-221ENST00000599833 STYK1Q6J9G0 422 aa24.97■■□□□ 1.59
SHKBP1-221ENST00000599833 NPHP1O15259 732 aa24.96■■□□□ 1.59
SHKBP1-221ENST00000599833 FKBP5Q13451 457 aaPredicted RBP24.96■■□□□ 1.59
SHKBP1-221ENST00000599833 ALDH1L2Q3SY69 923 aa24.96■■□□□ 1.59
SHKBP1-221ENST00000599833 CCDC191Q8NCU4 936 aa24.96■■□□□ 1.59
SHKBP1-221ENST00000599833 TRMT112Q9UI30 125 aaKnown RBP24.96■■□□□ 1.59
SHKBP1-221ENST00000599833 COL4A1P02462 1669 aa24.96■■□□□ 1.59
SHKBP1-221ENST00000599833 SH3TC1Q8TE82 1336 aa24.95■■□□□ 1.58
SHKBP1-221ENST00000599833 GRIN3BO60391 1043 aa24.95■■□□□ 1.58
SHKBP1-221ENST00000599833 DNAAF4Q8WXU2 420 aa24.95■■□□□ 1.58
SHKBP1-221ENST00000599833 FAM89AQ96GI7 184 aa24.95■■□□□ 1.58
SHKBP1-221ENST00000599833 MASTLQ96GX5 879 aa24.95■■□□□ 1.58
SHKBP1-221ENST00000599833 FER1L6Q2WGJ9 1857 aa24.95■■□□□ 1.58
SHKBP1-221ENST00000599833 TAF1P21675 1872 aa24.94■■□□□ 1.58
SHKBP1-221ENST00000599833 NEURL1BA8MQ27 555 aa24.94■■□□□ 1.58
SHKBP1-221ENST00000599833 F6X3S4 739 aa24.94■■□□□ 1.58
SHKBP1-221ENST00000599833 NPR1P16066 1061 aa24.94■■□□□ 1.58
SHKBP1-221ENST00000599833 GTF2E1P29083 439 aaPredicted RBP24.94■■□□□ 1.58
SHKBP1-221ENST00000599833 TTLL6Q8N841 843 aa24.94■■□□□ 1.58
SHKBP1-221ENST00000599833 C7orf43Q8WVR3 580 aa24.94■■□□□ 1.58
SHKBP1-221ENST00000599833 SNED1Q8TER0 1413 aa24.94■■□□□ 1.58
SHKBP1-221ENST00000599833 SBF1O95248 1867 aa24.94■■□□□ 1.58
SHKBP1-221ENST00000599833 HCLS1P14317 486 aaPredicted RBP24.93■■□□□ 1.58
SHKBP1-221ENST00000599833 HOXA10P31260 410 aaPredicted RBP24.93■■□□□ 1.58
SHKBP1-221ENST00000599833 CWF19L2Q2TBE0 894 aaKnown RBP24.93■■□□□ 1.58
SHKBP1-221ENST00000599833 ZNF622Q969S3 477 aaKnown RBP eCLIP24.93■■□□□ 1.58
SHKBP1-221ENST00000599833 BCL2L13Q9BXK5 485 aa24.93■■□□□ 1.58
SHKBP1-221ENST00000599833 BRPF1P55201 1214 aaPredicted RBP24.92■■□□□ 1.58
SHKBP1-221ENST00000599833 ZBTB38Q8NAP3 1195 aaPredicted RBP24.92■■□□□ 1.58
SHKBP1-221ENST00000599833 CWC25Q9NXE8 425 aaPredicted RBP24.92■■□□□ 1.58
SHKBP1-221ENST00000599833 DCAF8L1A6NGE4 600 aa24.91■■□□□ 1.58
SHKBP1-221ENST00000599833 PCCAP05165 728 aaPredicted RBP24.91■■□□□ 1.58
SHKBP1-221ENST00000599833 RARSP54136 660 aaKnown RBP24.91■■□□□ 1.58
SHKBP1-221ENST00000599833 BEND3Q5T5X7 828 aa24.91■■□□□ 1.58
SHKBP1-221ENST00000599833 SLC51AQ86UW1 340 aa24.91■■□□□ 1.58
SHKBP1-221ENST00000599833 PRPF40BQ6NWY9 871 aaKnown RBP24.9■■□□□ 1.58
SHKBP1-221ENST00000599833 MYH3P11055 1940 aa24.89■■□□□ 1.58
SHKBP1-221ENST00000599833 CASP7P55210 303 aa24.89■■□□□ 1.58
SHKBP1-221ENST00000599833 LINS1Q8NG48 757 aa24.89■■□□□ 1.58
SHKBP1-221ENST00000599833 JARID2Q92833 1246 aaPredicted RBP24.89■■□□□ 1.58
SHKBP1-221ENST00000599833 CNKSR1Q969H4 720 aa24.89■■□□□ 1.58
SHKBP1-221ENST00000599833 PRELPP51888 382 aa24.88■■□□□ 1.57
SHKBP1-221ENST00000599833 GCKRQ14397 625 aa24.88■■□□□ 1.57
SHKBP1-221ENST00000599833 RTL5Q5HYW3 569 aaPredicted RBP24.88■■□□□ 1.57
SHKBP1-221ENST00000599833 NLRP3Q96P20 1036 aa24.88■■□□□ 1.57
SHKBP1-221ENST00000599833 PTPRCP08575 1304 aa24.87■■□□□ 1.57
SHKBP1-221ENST00000599833 CDHR2Q9BYE9 1310 aa24.87■■□□□ 1.57
SHKBP1-221ENST00000599833 H7C1W4 665 aa24.87■■□□□ 1.57
SHKBP1-221ENST00000599833 IRS4O14654 1257 aaPredicted RBP24.87■■□□□ 1.57
SHKBP1-221ENST00000599833 SF3B3Q15393 1217 aaKnown RBP24.87■■□□□ 1.57
SHKBP1-221ENST00000599833 NEXNQ0ZGT2 675 aa24.86■■□□□ 1.57
SHKBP1-221ENST00000599833 CRAMP1Q96RY5 1269 aa24.86■■□□□ 1.57
SHKBP1-221ENST00000599833 SMC4Q9NTJ3 1288 aa24.86■■□□□ 1.57
SHKBP1-221ENST00000599833 NFKBIEO00221 500 aa24.85■■□□□ 1.57
SHKBP1-221ENST00000599833 C21orf2O43822 256 aa24.85■■□□□ 1.57
SHKBP1-221ENST00000599833 OLFM4Q6UX06 510 aa24.85■■□□□ 1.57
SHKBP1-221ENST00000599833 LRRC37AA6NMS7 1700 aa24.85■■□□□ 1.57
SHKBP1-221ENST00000599833 CCDC88AQ3V6T2 1871 aa24.85■■□□□ 1.57
SHKBP1-221ENST00000599833 ABCC4O15439 1325 aa24.85■■□□□ 1.57
SHKBP1-221ENST00000599833 ARHGAP27Q6ZUM4 889 aa24.83■■□□□ 1.57
SHKBP1-221ENST00000599833 ALDH1B1P30837 517 aa24.82■■□□□ 1.56
SHKBP1-221ENST00000599833 RASSF7Q02833 373 aa24.82■■□□□ 1.56
SHKBP1-221ENST00000599833 RPGRQ92834 1020 aaKnown RBP24.82■■□□□ 1.56
SHKBP1-221ENST00000599833 BCAR3O75815 825 aa24.81■■□□□ 1.56
SHKBP1-221ENST00000599833 RBM17Q96I25 401 aaKnown RBP24.81■■□□□ 1.56
SHKBP1-221ENST00000599833 ZNF219Q9P2Y4 722 aaPredicted RBP24.81■■□□□ 1.56
SHKBP1-221ENST00000599833 NOB1Q9ULX3 412 aaKnown RBP24.81■■□□□ 1.56
SHKBP1-221ENST00000599833 DICER1Q9UPY3 1922 aaKnown RBP24.8■■□□□ 1.56
SHKBP1-221ENST00000599833 PDE8AO60658 829 aa24.8■■□□□ 1.56
SHKBP1-221ENST00000599833 PLA2G12BQ9BX93 195 aa24.8■■□□□ 1.56
SHKBP1-221ENST00000599833 LTBP1Q14766 1721 aa24.79■■□□□ 1.56
SHKBP1-221ENST00000599833 ALDH1L1O75891 902 aa24.79■■□□□ 1.56
SHKBP1-221ENST00000599833 UBE3BQ7Z3V4 1068 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms