RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 RRP7AQ9Y3A4 280 aaKnown RBP23.33■■□□□ 1.33
CLK3-221ENST00000568139 KIF6Q6ZMV9 814 aa23.32■■□□□ 1.32
CLK3-221ENST00000568139 CNTROBQ8N137 903 aa23.32■■□□□ 1.32
CLK3-221ENST00000568139 JDP2Q8WYK2 163 aa23.32■■□□□ 1.32
CLK3-221ENST00000568139 GRIPAP1Q4V328 841 aa23.31■■□□□ 1.32
CLK3-221ENST00000568139 PRDM10Q9NQV6 1147 aa23.31■■□□□ 1.32
CLK3-221ENST00000568139 UBN2Q6ZU65 1347 aa23.31■■□□□ 1.32
CLK3-221ENST00000568139 COL4A5P29400 1685 aa23.3■■□□□ 1.32
CLK3-221ENST00000568139 NFE2L2Q16236 605 aa23.3■■□□□ 1.32
CLK3-221ENST00000568139 SUSD4Q5VX71 490 aa23.3■■□□□ 1.32
CLK3-221ENST00000568139 ZNF34Q8IZ26 560 aa23.3■■□□□ 1.32
CLK3-221ENST00000568139 RPGRQ92834 1020 aaKnown RBP23.3■■□□□ 1.32
CLK3-221ENST00000568139 MYL6BP14649 208 aa23.29■■□□□ 1.32
CLK3-221ENST00000568139 GPTP24298 496 aa23.29■■□□□ 1.32
CLK3-221ENST00000568139 EIF6P56537 245 aaKnown RBP23.29■■□□□ 1.32
CLK3-221ENST00000568139 MAP1SQ66K74 1059 aaPredicted RBP23.29■■□□□ 1.32
CLK3-221ENST00000568139 CRAMP1Q96RY5 1269 aa23.29■■□□□ 1.32
CLK3-221ENST00000568139 RASSF10A6NK89 507 aa23.28■■□□□ 1.32
CLK3-221ENST00000568139 GIGYF2Q6Y7W6 1299 aaKnown RBP23.28■■□□□ 1.32
CLK3-221ENST00000568139 THUMPD2Q9BTF0 503 aaKnown RBP23.28■■□□□ 1.32
CLK3-221ENST00000568139 ZBTB3Q9H5J0 574 aa23.28■■□□□ 1.32
CLK3-221ENST00000568139 WBP1LQ9NX94 342 aa23.28■■□□□ 1.32
CLK3-221ENST00000568139 LTBP1Q14766 1721 aa23.28■■□□□ 1.32
CLK3-221ENST00000568139 NTSR2O95665 410 aa23.27■■□□□ 1.32
CLK3-221ENST00000568139 CTCFP49711 727 aaPredicted RBP23.27■■□□□ 1.32
CLK3-221ENST00000568139 AIDAQ96BJ3 306 aa23.27■■□□□ 1.32
CLK3-221ENST00000568139 RBM17Q96I25 401 aaKnown RBP23.27■■□□□ 1.32
CLK3-221ENST00000568139 ERBB4Q15303 1308 aa23.27■■□□□ 1.32
CLK3-221ENST00000568139 DEFB115Q30KQ5 88 aa23.26■■□□□ 1.31
CLK3-221ENST00000568139 LARGE2Q8N3Y3 721 aa23.25■■□□□ 1.31
CLK3-221ENST00000568139 GJA3Q9Y6H8 435 aa23.25■■□□□ 1.31
CLK3-221ENST00000568139 PPEF1O14829 653 aaPredicted RBP23.24■■□□□ 1.31
CLK3-221ENST00000568139 SCNN1DP51172 638 aa23.24■■□□□ 1.31
CLK3-221ENST00000568139 LRP10Q7Z4F1 713 aa23.24■■□□□ 1.31
CLK3-221ENST00000568139 PPP1R42Q7Z4L9 355 aa23.24■■□□□ 1.31
CLK3-221ENST00000568139 PNNQ9H307 717 aaKnown RBP23.24■■□□□ 1.31
CLK3-221ENST00000568139 LMOD1P29536 600 aaPredicted RBP23.23■■□□□ 1.31
CLK3-221ENST00000568139 EPS15P42566 896 aa23.23■■□□□ 1.31
CLK3-221ENST00000568139 PARP10Q53GL7 1025 aa23.23■■□□□ 1.31
CLK3-221ENST00000568139 C3orf67Q6ZVT6 689 aa23.23■■□□□ 1.31
CLK3-221ENST00000568139 SLC51AQ86UW1 340 aa23.23■■□□□ 1.31
CLK3-221ENST00000568139 DDX21Q9NR30 783 aaKnown RBP eCLIP23.23■■□□□ 1.31
CLK3-221ENST00000568139 PDIA6Q15084 440 aa23.22■■□□□ 1.31
CLK3-221ENST00000568139 SLC10A5Q5PT55 438 aa23.21■■□□□ 1.31
CLK3-221ENST00000568139 NLRP3Q96P20 1036 aa23.21■■□□□ 1.31
CLK3-221ENST00000568139 VPS33BQ9H267 617 aa23.21■■□□□ 1.31
CLK3-221ENST00000568139 WDR33Q9C0J8 1336 aaKnown RBP23.21■■□□□ 1.31
CLK3-221ENST00000568139 TRPM7Q96QT4 1865 aa23.2■■□□□ 1.3
CLK3-221ENST00000568139 MAPK8IP3Q9UPT6 1336 aa23.2■■□□□ 1.3
CLK3-221ENST00000568139 TCERG1O14776 1098 aaKnown RBP23.2■■□□□ 1.3
CLK3-221ENST00000568139 LBX1P52954 281 aa23.2■■□□□ 1.3
CLK3-221ENST00000568139 USP50Q70EL3 339 aaPredicted RBP23.2■■□□□ 1.3
CLK3-221ENST00000568139 NIM1KQ8IY84 436 aa23.2■■□□□ 1.3
CLK3-221ENST00000568139 TSPYL4Q9UJ04 414 aa23.2■■□□□ 1.3
CLK3-221ENST00000568139 ABT1Q9ULW3 272 aaKnown RBP23.2■■□□□ 1.3
CLK3-221ENST00000568139 UTP14AQ9BVJ6 771 aaKnown RBP23.19■■□□□ 1.3
CLK3-221ENST00000568139 ATP6V0A2Q9Y487 856 aa23.19■■□□□ 1.3
CLK3-221ENST00000568139 PPIP5K2O43314 1243 aa23.18■■□□□ 1.3
CLK3-221ENST00000568139 MAP2K1Q02750 393 aaPredicted RBP23.18■■□□□ 1.3
CLK3-221ENST00000568139 HSPA8P11142 646 aaKnown RBP23.17■■□□□ 1.3
CLK3-221ENST00000568139 EIF2S2P20042 333 aaKnown RBP23.17■■□□□ 1.3
CLK3-221ENST00000568139 FMR1Q06787 632 aaKnown RBP eCLIP23.17■■□□□ 1.3
CLK3-221ENST00000568139 AOC3Q16853 763 aa23.17■■□□□ 1.3
CLK3-221ENST00000568139 RTFDC1Q9BY42 306 aaPredicted RBP23.17■■□□□ 1.3
CLK3-221ENST00000568139 TMX4Q9H1E5 349 aaPredicted RBP23.17■■□□□ 1.3
CLK3-221ENST00000568139 BABAM1Q9NWV8 329 aa23.17■■□□□ 1.3
CLK3-221ENST00000568139 PROSER3Q2NL68 480 aa23.16■■□□□ 1.3
CLK3-221ENST00000568139 LAMB2P55268 1798 aa23.16■■□□□ 1.3
CLK3-221ENST00000568139 ANKRD36CQ5JPF3 1778 aa23.16■■□□□ 1.3
CLK3-221ENST00000568139 ABCC4O15439 1325 aa23.15■■□□□ 1.3
CLK3-221ENST00000568139 RIPK4P57078 832 aa23.15■■□□□ 1.3
CLK3-221ENST00000568139 CST9Q5W186 159 aa23.15■■□□□ 1.3
CLK3-221ENST00000568139 GPRC5DQ9NZD1 345 aa23.15■■□□□ 1.3
CLK3-221ENST00000568139 THSD7BQ9C0I4 1608 aa23.15■■□□□ 1.3
CLK3-221ENST00000568139 BBOX1O75936 387 aa23.14■■□□□ 1.29
CLK3-221ENST00000568139 ANXA1P04083 346 aa23.14■■□□□ 1.29
CLK3-221ENST00000568139 SUPT20HQ8NEM7 779 aa23.14■■□□□ 1.29
CLK3-221ENST00000568139 ADARB2Q9NS39 739 aaKnown RBP23.14■■□□□ 1.29
CLK3-221ENST00000568139 ZNRF3Q9ULT6 936 aa23.14■■□□□ 1.29
CLK3-221ENST00000568139 CXCL9Q07325 125 aa23.13■■□□□ 1.29
CLK3-221ENST00000568139 SP8Q8IXZ3 490 aa23.13■■□□□ 1.29
CLK3-221ENST00000568139 CAPNS2Q96L46 248 aa23.13■■□□□ 1.29
CLK3-221ENST00000568139 TRAF5O00463 557 aa23.12■■□□□ 1.29
CLK3-221ENST00000568139 ECE1P42892 770 aa23.12■■□□□ 1.29
CLK3-221ENST00000568139 HSP90AB3PQ58FF7 597 aa23.12■■□□□ 1.29
CLK3-221ENST00000568139 COPS6Q7L5N1 327 aa23.12■■□□□ 1.29
CLK3-221ENST00000568139 NLRP10Q86W26 655 aa23.12■■□□□ 1.29
CLK3-221ENST00000568139 TLL2Q9Y6L7 1015 aa23.12■■□□□ 1.29
CLK3-221ENST00000568139 TMPOP42166 694 aaKnown RBP23.1■■□□□ 1.29
CLK3-221ENST00000568139 CYP4F22Q6NT55 531 aa23.1■■□□□ 1.29
CLK3-221ENST00000568139 DPP8Q6V1X1 898 aaPredicted RBP23.1■■□□□ 1.29
CLK3-221ENST00000568139 MPNDQ8N594 471 aa23.1■■□□□ 1.29
CLK3-221ENST00000568139 GPR101Q96P66 508 aaPredicted RBP23.1■■□□□ 1.29
CLK3-221ENST00000568139 HCLS1P14317 486 aaPredicted RBP23.09■■□□□ 1.29
CLK3-221ENST00000568139 LMOD3Q0VAK6 560 aa23.09■■□□□ 1.29
CLK3-221ENST00000568139 KIAA2012Q0VF49 1180 aa23.09■■□□□ 1.29
CLK3-221ENST00000568139 AIMP1Q12904 312 aaKnown RBP23.09■■□□□ 1.29
CLK3-221ENST00000568139 TCIRG1Q13488 830 aa23.09■■□□□ 1.29
CLK3-221ENST00000568139 XAGE3Q8WTP9 111 aa23.09■■□□□ 1.29
CLK3-221ENST00000568139 PGAP2Q9UHJ9 254 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms