RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 HSP90B1P14625 803 aaKnown RBP16.03■□□□□ 0.16
CLK3-214ENST00000564096 GPTP24298 496 aa16.03■□□□□ 0.16
CLK3-214ENST00000564096 B4GALNT3Q6L9W6 998 aa16.03■□□□□ 0.16
CLK3-214ENST00000564096 UBE3BQ7Z3V4 1068 aa16.03■□□□□ 0.16
CLK3-214ENST00000564096 PPP1R42Q7Z4L9 355 aa16.03■□□□□ 0.16
CLK3-214ENST00000564096 DEFB132Q7Z7B7 95 aa16.03■□□□□ 0.16
CLK3-214ENST00000564096 NLRP10Q86W26 655 aa16.03■□□□□ 0.16
CLK3-214ENST00000564096 ZNF34Q8IZ26 560 aa16.03■□□□□ 0.16
CLK3-214ENST00000564096 NIP7Q9Y221 180 aaKnown RBP eCLIP16.03■□□□□ 0.16
CLK3-214ENST00000564096 LRRFIP2Q9Y608 721 aaKnown RBP16.03■□□□□ 0.16
CLK3-214ENST00000564096 PCCAP05165 728 aaPredicted RBP16.02■□□□□ 0.16
CLK3-214ENST00000564096 PPP4R3CPQ6ZMV5 832 aa16.02■□□□□ 0.16
CLK3-214ENST00000564096 CENPQQ7L2Z9 268 aaPredicted RBP16.02■□□□□ 0.16
CLK3-214ENST00000564096 SRP68Q9UHB9 627 aaKnown RBP16.02■□□□□ 0.16
CLK3-214ENST00000564096 CARMIL3Q8ND23 1372 aa16.01■□□□□ 0.15
CLK3-214ENST00000564096 NUP98P52948 1817 aa16.01■□□□□ 0.15
CLK3-214ENST00000564096 UBN2Q6ZU65 1347 aa16.01■□□□□ 0.15
CLK3-214ENST00000564096 HDAC1Q13547 482 aaPredicted RBP16.01■□□□□ 0.15
CLK3-214ENST00000564096 SLC15A2Q16348 729 aa16.01■□□□□ 0.15
CLK3-214ENST00000564096 CEP85Q6P2H3 762 aa16.01■□□□□ 0.15
CLK3-214ENST00000564096 AMIGO3Q86WK7 504 aa16.01■□□□□ 0.15
CLK3-214ENST00000564096 ANKRD44Q8N8A2 993 aa16.01■□□□□ 0.15
CLK3-214ENST00000564096 ZBTB38Q8NAP3 1195 aaPredicted RBP16.01■□□□□ 0.15
CLK3-214ENST00000564096 UTP14AQ9BVJ6 771 aaKnown RBP16.01■□□□□ 0.15
CLK3-214ENST00000564096 PCDHB15Q9Y5E8 787 aa16.01■□□□□ 0.15
CLK3-214ENST00000564096 SH3TC1Q8TE82 1336 aa16■□□□□ 0.15
CLK3-214ENST00000564096 CDHR2Q9BYE9 1310 aa16■□□□□ 0.15
CLK3-214ENST00000564096 QSER1Q2KHR3 1735 aa16■□□□□ 0.15
CLK3-214ENST00000564096 SETDB2Q96T68 719 aa16■□□□□ 0.15
CLK3-214ENST00000564096 NYXQ9GZU5 481 aa16■□□□□ 0.15
CLK3-214ENST00000564096 TRMT112Q9UI30 125 aaKnown RBP16■□□□□ 0.15
CLK3-214ENST00000564096 COL24A1Q17RW2 1714 aa15.99■□□□□ 0.15
CLK3-214ENST00000564096 H7C1W4 665 aa15.99■□□□□ 0.15
CLK3-214ENST00000564096 SUCLG2Q96I99 432 aa15.99■□□□□ 0.15
CLK3-214ENST00000564096 ANO8Q9HCE9 1232 aaPredicted RBP15.99■□□□□ 0.15
CLK3-214ENST00000564096 PNPLA7Q6ZV29 1317 aa15.98■□□□□ 0.15
CLK3-214ENST00000564096 NPHP1O15259 732 aa15.98■□□□□ 0.15
CLK3-214ENST00000564096 BCL2L12Q9HB09 334 aa15.98■□□□□ 0.15
CLK3-214ENST00000564096 TUBGCP6Q96RT7 1819 aa15.98■□□□□ 0.15
CLK3-214ENST00000564096 GYS1P13807 737 aa15.97■□□□□ 0.15
CLK3-214ENST00000564096 KCNA4P22459 653 aa15.97■□□□□ 0.15
CLK3-214ENST00000564096 CASP7P55210 303 aa15.97■□□□□ 0.15
CLK3-214ENST00000564096 MTX1Q13505 466 aa15.97■□□□□ 0.15
CLK3-214ENST00000564096 TBC1D9BQ66K14 1250 aa15.97■□□□□ 0.15
CLK3-214ENST00000564096 BICDL1Q6ZP65 573 aa15.97■□□□□ 0.15
CLK3-214ENST00000564096 SMIM5Q71RC9 77 aa15.97■□□□□ 0.15
CLK3-214ENST00000564096 NBPF5PQ86XG9 351 aaPredicted RBP15.97■□□□□ 0.15
CLK3-214ENST00000564096 BICC1Q9H694 974 aaKnown RBP15.97■□□□□ 0.15
CLK3-214ENST00000564096 KDM2BQ8NHM5 1336 aa15.96■□□□□ 0.15
CLK3-214ENST00000564096 SRGAP3O43295 1099 aa15.96■□□□□ 0.15
CLK3-214ENST00000564096 NTSR2O95665 410 aa15.96■□□□□ 0.15
CLK3-214ENST00000564096 GTF2E1P29083 439 aaPredicted RBP15.96■□□□□ 0.15
CLK3-214ENST00000564096 SUSD4Q5VX71 490 aa15.96■□□□□ 0.15
CLK3-214ENST00000564096 COL23A1Q86Y22 540 aaPredicted RBP15.96■□□□□ 0.15
CLK3-214ENST00000564096 NLGN1Q8N2Q7 840 aa15.96■□□□□ 0.15
CLK3-214ENST00000564096 GCC1Q96CN9 775 aa15.96■□□□□ 0.15
CLK3-214ENST00000564096 PLA2G12BQ9BX93 195 aa15.96■□□□□ 0.15
CLK3-214ENST00000564096 LAMB2P55268 1798 aa15.95■□□□□ 0.14
CLK3-214ENST00000564096 IRS4O14654 1257 aaPredicted RBP15.95■□□□□ 0.14
CLK3-214ENST00000564096 ATP8B2P98198 1209 aa15.95■□□□□ 0.14
CLK3-214ENST00000564096 RABL6Q3YEC7 729 aaPredicted RBP15.95■□□□□ 0.14
CLK3-214ENST00000564096 RTL5Q5HYW3 569 aaPredicted RBP15.95■□□□□ 0.14
CLK3-214ENST00000564096 FAM89AQ96GI7 184 aa15.95■□□□□ 0.14
CLK3-214ENST00000564096 FAM177BA6PVY3 158 aa15.94■□□□□ 0.14
CLK3-214ENST00000564096 NFIXQ14938 502 aa15.94■□□□□ 0.14
CLK3-214ENST00000564096 TPTE2Q6XPS3 522 aa15.94■□□□□ 0.14
CLK3-214ENST00000564096 CNBD1Q8NA66 436 aa15.94■□□□□ 0.14
CLK3-214ENST00000564096 ZBTB47Q9UFB7 747 aaPredicted RBP15.94■□□□□ 0.14
CLK3-214ENST00000564096 CHMP3Q9Y3E7 222 aa15.94■□□□□ 0.14
CLK3-214ENST00000564096 PDE8AO60658 829 aa15.93■□□□□ 0.14
CLK3-214ENST00000564096 CTSWP56202 376 aa15.93■□□□□ 0.14
CLK3-214ENST00000564096 ST5P78524 1137 aa15.93■□□□□ 0.14
CLK3-214ENST00000564096 HSP90AB4PQ58FF6 505 aa15.93■□□□□ 0.14
CLK3-214ENST00000564096 SSH3Q8TE77 659 aa15.93■□□□□ 0.14
CLK3-214ENST00000564096 RIC1Q4ADV7 1423 aa15.93■□□□□ 0.14
CLK3-214ENST00000564096 PNMA6EA0A0J9YXQ4 647 aa15.92■□□□□ 0.14
CLK3-214ENST00000564096 IGHDP01880 384 aa15.92■□□□□ 0.14
CLK3-214ENST00000564096 POLA2Q14181 598 aa15.92■□□□□ 0.14
CLK3-214ENST00000564096 SIRT2Q8IXJ6 389 aa15.92■□□□□ 0.14
CLK3-214ENST00000564096 JARID2Q92833 1246 aaPredicted RBP15.92■□□□□ 0.14
CLK3-214ENST00000564096 KAZALD1Q96I82 304 aa15.92■□□□□ 0.14
CLK3-214ENST00000564096 LMBR1LQ6UX01 489 aa15.91■□□□□ 0.14
CLK3-214ENST00000564096 SMC5Q8IY18 1101 aa15.91■□□□□ 0.14
CLK3-214ENST00000564096 ABCC12Q96J65 1359 aa15.9■□□□□ 0.14
CLK3-214ENST00000564096 FOXO4P98177 505 aa15.9■□□□□ 0.14
CLK3-214ENST00000564096 OS9Q13438 667 aaPredicted RBP15.9■□□□□ 0.14
CLK3-214ENST00000564096 CCDC57Q2TAC2 916 aa15.9■□□□□ 0.14
CLK3-214ENST00000564096 CCDC152Q4G0S7 254 aa15.9■□□□□ 0.14
CLK3-214ENST00000564096 EPHA10Q5JZY3 1008 aa15.9■□□□□ 0.14
CLK3-214ENST00000564096 NUTM1Q86Y26 1132 aa15.9■□□□□ 0.14
CLK3-214ENST00000564096 SLC16A10Q8TF71 515 aa15.9■□□□□ 0.14
CLK3-214ENST00000564096 DCTPP1Q9H773 170 aa15.9■□□□□ 0.14
CLK3-214ENST00000564096 POLRMTO00411 1230 aaKnown RBP15.89■□□□□ 0.13
CLK3-214ENST00000564096 IFIT5Q13325 482 aaKnown RBP15.89■□□□□ 0.13
CLK3-214ENST00000564096 ERFEQ4G0M1 354 aa15.89■□□□□ 0.13
CLK3-214ENST00000564096 TAF7LQ5H9L4 462 aa15.89■□□□□ 0.13
CLK3-214ENST00000564096 ERC1Q8IUD2 1116 aa15.89■□□□□ 0.13
CLK3-214ENST00000564096 PARP3Q9Y6F1 533 aa15.89■□□□□ 0.13
CLK3-214ENST00000564096 RTL9Q8NET4 1388 aa15.88■□□□□ 0.13
CLK3-214ENST00000564096 RAB11FIP3O75154 756 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms