RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 NEK1Q96PY6 1258 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 PYCARDQ9ULZ3 195 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 TRPM2O94759 1503 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 ACEP12821 1306 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 NAP1L1P55209 391 aaKnown RBP8.28□□□□□ -1.08
USP3-210ENST00000559192 GSDMDP57764 484 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 ESCO1Q5FWF5 840 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 ZNF397Q8NF99 534 aaPredicted RBP8.28□□□□□ -1.08
USP3-210ENST00000559192 BRF1Q92994 677 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 GTF3C6Q969F1 213 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 ZSWIM4Q9H7M6 989 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 PHAXQ9H814 394 aaKnown RBP8.28□□□□□ -1.08
USP3-210ENST00000559192 CBX8Q9HC52 389 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 ATP7AQ04656 1500 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 CREB3L3Q68CJ9 461 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 Q6ZUG5 572 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 JMYQ8N9B5 988 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 BMS1Q14692 1282 aaKnown RBP8.27□□□□□ -1.08
USP3-210ENST00000559192 VPS53Q5VIR6 699 aa8.27□□□□□ -1.08
USP3-210ENST00000559192 LARP1Q6PKG0 1096 aaKnown RBP8.27□□□□□ -1.08
USP3-210ENST00000559192 CCDC85AQ96PX6 553 aaPredicted RBP8.27□□□□□ -1.08
USP3-210ENST00000559192 SMARCE1Q969G3 411 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 PREX2Q70Z35 1606 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 IBSPP21815 317 aaPredicted RBP8.27□□□□□ -1.09
USP3-210ENST00000559192 ZRSR2Q15696 482 aaKnown RBP8.27□□□□□ -1.09
USP3-210ENST00000559192 FILIP1LQ4L180 1135 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 CDC37L1Q7L3B6 337 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 PLCD3Q8N3E9 789 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 C8orf76Q96K31 380 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 DNAI1Q9UI46 699 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 ABCA8O94911 1581 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 ZSCAN12O43309 604 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 CCDC158Q5M9N0 1113 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 SYT10Q6XYQ8 523 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 OSCARQ8IYS5 282 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 CPLX3Q8WVH0 158 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 SOS1Q07889 1333 aaPredicted RBP8.27□□□□□ -1.09
USP3-210ENST00000559192 TTC21BQ7Z4L5 1316 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 MYO5CQ9NQX4 1742 aa8.27□□□□□ -1.09
USP3-210ENST00000559192 SLU7O95391 586 aaKnown RBP8.26□□□□□ -1.09
USP3-210ENST00000559192 SLC3A2P08195 630 aaKnown RBP8.26□□□□□ -1.09
USP3-210ENST00000559192 DHX8Q14562 1220 aaKnown RBP8.26□□□□□ -1.09
USP3-210ENST00000559192 PUS7Q96PZ0 661 aaKnown RBP8.26□□□□□ -1.09
USP3-210ENST00000559192 KIF2CQ99661 725 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 RTL1A6NKG5 1358 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 IBTKQ9P2D0 1353 aaPredicted RBP8.26□□□□□ -1.09
USP3-210ENST00000559192 ERLIN1O75477 346 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 ZNF75DP51815 510 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 LRMPQ12912 555 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 SYTL4Q96C24 671 aaPredicted RBP8.26□□□□□ -1.09
USP3-210ENST00000559192 U3KPZ7 1027 aaPredicted RBP8.26□□□□□ -1.09
USP3-210ENST00000559192 EIF3JO75822 258 aaKnown RBP8.26□□□□□ -1.09
USP3-210ENST00000559192 DMTNQ08495 405 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 ELF2Q15723 593 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 FEZ1Q99689 392 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 LMAN1P49257 510 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 TICAM2Q86XR7 235 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 CCDC150Q8NCX0 1101 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 NPATQ14207 1427 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 YTHDC2Q9H6S0 1430 aaKnown RBP8.26□□□□□ -1.09
USP3-210ENST00000559192 IQGAP3Q86VI3 1631 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 E9PCH4 1651 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 PAXIP1Q6ZW49 1069 aaPredicted RBP8.26□□□□□ -1.09
USP3-210ENST00000559192 DACH1Q9UI36 760 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 MTMR7Q9Y216 660 aa8.26□□□□□ -1.09
USP3-210ENST00000559192 MADDQ8WXG6 1647 aa8.25□□□□□ -1.09
USP3-210ENST00000559192 HAND2P61296 217 aa8.25□□□□□ -1.09
USP3-210ENST00000559192 DDX46Q7L014 1031 aaKnown RBP8.25□□□□□ -1.09
USP3-210ENST00000559192 CCDC144CPQ8IYA2 1237 aa8.25□□□□□ -1.09
USP3-210ENST00000559192 NUP133Q8WUM0 1156 aa8.25□□□□□ -1.09
USP3-210ENST00000559192 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.25□□□□□ -1.09
USP3-210ENST00000559192 GOLGA8BA8MQT2 603 aa8.25□□□□□ -1.09
USP3-210ENST00000559192 GOLIM4O00461 696 aa8.25□□□□□ -1.09
USP3-210ENST00000559192 HSPA4P34932 840 aa8.25□□□□□ -1.09
USP3-210ENST00000559192 IMMTQ16891 758 aaKnown RBP8.25□□□□□ -1.09
USP3-210ENST00000559192 KLHL10Q6JEL2 608 aa8.25□□□□□ -1.09
USP3-210ENST00000559192 CHST3Q7LGC8 479 aa8.25□□□□□ -1.09
USP3-210ENST00000559192 GTF2A1P52655 376 aaPredicted RBP8.25□□□□□ -1.09
USP3-210ENST00000559192 ZSCAN16Q9H4T2 348 aaPredicted RBP8.25□□□□□ -1.09
USP3-210ENST00000559192 CLTCL1P53675 1640 aa8.25□□□□□ -1.09
USP3-210ENST00000559192 CFAP65Q6ZU64 1925 aaKnown RBP8.25□□□□□ -1.09
USP3-210ENST00000559192 UNC5CLQ8IV45 518 aa8.25□□□□□ -1.09
USP3-210ENST00000559192 RAD50Q92878 1312 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 SGSM2O43147 1006 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 GNG11P61952 73 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 LIG1P18858 919 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 ARHGAP29Q52LW3 1261 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 ZSCAN25Q6NSZ9 544 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 FAM227BQ96M60 508 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 TRIM34Q9BYJ4 488 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 CLSTN2Q9H4D0 955 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 IFNKQ9P0W0 207 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 VGLL3A8MV65 326 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 APOBRQ0VD83 1088 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 CWF19L2Q2TBE0 894 aaKnown RBP8.24□□□□□ -1.09
USP3-210ENST00000559192 HMG20BQ9P0W2 317 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 DBF4Q9UBU7 674 aaPredicted RBP8.24□□□□□ -1.09
USP3-210ENST00000559192 RGS12O14924 1447 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 CHL1O00533 1208 aa8.24□□□□□ -1.09
USP3-210ENST00000559192 NRBP1Q9UHY1 535 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms