RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 FZD5Q13467 585 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 MTFR1Q15390 333 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 TLR1Q15399 786 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 SH3PXD2AQ5TCZ1 1133 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 TMC4Q7Z404 712 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 PIK3R5Q8WYR1 880 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 UBXN4Q92575 508 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 MYO19Q96H55 970 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 PUS7Q96PZ0 661 aaKnown RBP4.83□□□□□ -1.64
TRAV28-201ENST00000557548 NIF3L1Q9GZT8 377 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 POLIQ9UNA4 740 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 CHMP3Q9Y3E7 222 aa4.83□□□□□ -1.64
TRAV28-201ENST00000557548 PNMA6FA0A0J9YX94 578 aa4.82□□□□□ -1.64
TRAV28-201ENST00000557548 EML1O00423 815 aa4.82□□□□□ -1.64
TRAV28-201ENST00000557548 ADH1CP00326 375 aa4.82□□□□□ -1.64
TRAV28-201ENST00000557548 HSP90B1P14625 803 aaKnown RBP4.82□□□□□ -1.64
TRAV28-201ENST00000557548 BRD2P25440 801 aaKnown RBP4.82□□□□□ -1.64
TRAV28-201ENST00000557548 ADD1P35611 737 aaKnown RBP4.82□□□□□ -1.64
TRAV28-201ENST00000557548 TXKP42681 527 aa4.82□□□□□ -1.64
TRAV28-201ENST00000557548 DAB2P98082 770 aa4.82□□□□□ -1.64
TRAV28-201ENST00000557548 DNM1Q05193 864 aaKnown RBP4.82□□□□□ -1.64
TRAV28-201ENST00000557548 ARTNQ5T4W7 220 aa4.82□□□□□ -1.64
TRAV28-201ENST00000557548 METTL16Q86W50 562 aaKnown RBP4.82□□□□□ -1.64
TRAV28-201ENST00000557548 NT5DC4Q86YG4 428 aa4.82□□□□□ -1.64
TRAV28-201ENST00000557548 EDEM1Q92611 657 aa4.82□□□□□ -1.64
TRAV28-201ENST00000557548 ALKBH8Q96BT7 664 aaKnown RBP4.82□□□□□ -1.64
TRAV28-201ENST00000557548 IQSEC3Q9UPP2 1182 aaPredicted RBP4.82□□□□□ -1.64
TRAV28-201ENST00000557548 SERTM1A2A2V5 107 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 CDK2AP1O14519 115 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 NR3C2P08235 984 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 HMGB1P09429 215 aaKnown RBP4.81□□□□□ -1.64
TRAV28-201ENST00000557548 ITGAEP38570 1179 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 FANCCQ00597 558 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 DGKZQ13574 1117 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 ENOX2Q16206 610 aaKnown RBP4.81□□□□□ -1.64
TRAV28-201ENST00000557548 ETFBKMTQ8IXQ9 262 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 GJD3Q8N144 294 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 CNKSR1Q969H4 720 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 XAGE2Q96GT9 111 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 SEMA6BQ9H3T3 888 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 ZNF232Q9UNY5 417 aa4.81□□□□□ -1.64
TRAV28-201ENST00000557548 KRBA1A5PL33 1030 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 SIAH2O43255 324 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 ADAMTS2O95450 1211 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 PDGFAP04085 211 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 CELA2BP08218 269 aaPredicted RBP4.8□□□□□ -1.64
TRAV28-201ENST00000557548 MZF1P28698 734 aaPredicted RBP4.8□□□□□ -1.64
TRAV28-201ENST00000557548 ZNF76P36508 570 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 ZAP70P43403 619 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 NR5A1Q13285 461 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 ALG1LQ6GMV1 187 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 POTEAQ6S8J7 498 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 ALYREFQ86V81 257 aaKnown RBP4.8□□□□□ -1.64
TRAV28-201ENST00000557548 ALDH16A1Q8IZ83 802 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 MPNDQ8N594 471 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 NBPF15Q8N660 670 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 ZDHHC1Q8WTX9 485 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 RNF34Q969K3 372 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 ESYT1Q9BSJ8 1104 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 CCSER2Q9H7U1 834 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 PGPEP1Q9NXJ5 209 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 CABP1Q9NZU7 370 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 KLK14Q9P0G3 267 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 HCN4Q9Y3Q4 1203 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 PARP3Q9Y6F1 533 aa4.8□□□□□ -1.64
TRAV28-201ENST00000557548 SMARCA5O60264 1052 aaPredicted RBP4.79□□□□□ -1.64
TRAV28-201ENST00000557548 GNA15P30679 374 aa4.79□□□□□ -1.64
TRAV28-201ENST00000557548 NOS2P35228 1153 aa4.79□□□□□ -1.64
TRAV28-201ENST00000557548 HIRAP54198 1017 aaPredicted RBP4.79□□□□□ -1.64
TRAV28-201ENST00000557548 TEAD4Q15561 434 aa4.79□□□□□ -1.64
TRAV28-201ENST00000557548 RTN1Q16799 776 aa4.79□□□□□ -1.64
TRAV28-201ENST00000557548 C11orf91Q3C1V1 193 aa4.79□□□□□ -1.64
TRAV28-201ENST00000557548 TINF2Q9BSI4 451 aa4.79□□□□□ -1.64
TRAV28-201ENST00000557548 TANGO6Q9C0B7 1094 aa4.79□□□□□ -1.64
TRAV28-201ENST00000557548 PHACTR1Q9C0D0 580 aa4.79□□□□□ -1.64
TRAV28-201ENST00000557548 TGIF2Q9GZN2 237 aa4.79□□□□□ -1.64
TRAV28-201ENST00000557548 METTL5Q9NRN9 209 aaKnown RBP4.79□□□□□ -1.64
TRAV28-201ENST00000557548 HRH3Q9Y5N1 445 aa4.79□□□□□ -1.64
TRAV28-201ENST00000557548 EMILIN1Q9Y6C2 1016 aa4.79□□□□□ -1.64
TRAV28-201ENST00000557548 ADH1AP07327 375 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 USP5P45974 858 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 CBLBQ13191 982 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 CLN3Q13286 438 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 ORC1Q13415 861 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 ZNF295-AS1Q8N0V1 137 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 KDF1Q8NAX2 398 aaPredicted RBP4.78□□□□□ -1.64
TRAV28-201ENST00000557548 L3MBTL2Q969R5 705 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 IFT43Q96FT9 208 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 CSRNP1Q96S65 589 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 CFHR5Q9BXR6 569 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 FHDC1Q9C0D6 1143 aaPredicted RBP4.78□□□□□ -1.64
TRAV28-201ENST00000557548 ACBD3Q9H3P7 528 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 CAPN10Q9HC96 672 aa4.78□□□□□ -1.64
TRAV28-201ENST00000557548 A6NHS1 94 aa4.77□□□□□ -1.65
TRAV28-201ENST00000557548 MEN1O00255 615 aa4.77□□□□□ -1.65
TRAV28-201ENST00000557548 CDK11BP21127 795 aaKnown RBP4.77□□□□□ -1.65
TRAV28-201ENST00000557548 TNNI2P48788 182 aa4.77□□□□□ -1.65
TRAV28-201ENST00000557548 CENPCQ03188 943 aa4.77□□□□□ -1.65
TRAV28-201ENST00000557548 TREML1Q86YW5 311 aa4.77□□□□□ -1.65
TRAV28-201ENST00000557548 GPR152Q8TDT2 470 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms