RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SSH3Q8TE77 659 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 FBXW7Q969H0 707 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 FAM227BQ96M60 508 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 TNMDQ9H2S6 317 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 CAPN2P17655 700 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 ZNF165P49910 485 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 CEBPZQ03701 1054 aaKnown RBP5.75□□□□□ -1.49
LIMA1-214ENST00000552783 CEP135Q66GS9 1140 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 SRGAP3O43295 1099 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 JAK2O60674 1132 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 TEFQ10587 303 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 LRRC8AQ8IWT6 810 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 LEO1Q8WVC0 666 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-214ENST00000552783 ZSWIM6Q9HCJ5 1215 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 PA2G4Q9UQ80 394 aaKnown RBP5.75□□□□□ -1.49
LIMA1-214ENST00000552783 AMOTL2Q9Y2J4 779 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 PEAK1Q9H792 1746 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 TTC21AQ8NDW8 1320 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 METP08581 1390 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 MLH3Q9UHC1 1453 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 DLC1Q96QB1 1528 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 GOLGA6L6A8MZA4 724 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 GNAI3P08754 354 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 UBTFL1P0CB47 393 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-214ENST00000552783 NECTIN1Q15223 517 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 HDGFL1Q5TGJ6 251 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 ZBTB9Q96C00 473 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 FAM53CQ9NYF3 392 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 TTC21BQ7Z4L5 1316 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 ADCY9O60503 1353 aa5.75□□□□□ -1.49
LIMA1-214ENST00000552783 XRN1Q8IZH2 1706 aaKnown RBP5.75□□□□□ -1.49
LIMA1-214ENST00000552783 FOSBP53539 338 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 AIMP1Q12904 312 aaKnown RBP5.74□□□□□ -1.49
LIMA1-214ENST00000552783 IQCB1Q15051 598 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 NYAP1Q6ZVC0 841 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 FILIP1Q7Z7B0 1213 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 TDRD7Q8NHU6 1098 aaKnown RBP5.74□□□□□ -1.49
LIMA1-214ENST00000552783 GTF3C6Q969F1 213 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 RNF39Q9H2S5 420 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 RICTORQ6R327 1708 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 A0A0G2JS52 829 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 RAB11FIP3O75154 756 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 KRT85P78386 507 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 GABPB1Q06547 395 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-214ENST00000552783 VPS53Q5VIR6 699 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 ATP6V1DQ9Y5K8 247 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 TPM3P06753 285 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 SKILP12757 684 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 CCZ1BP86790 482 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 CCZ1P86791 482 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-214ENST00000552783 PSME1Q06323 249 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 POLA2Q14181 598 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 ERCC6LQ2NKX8 1250 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 RBM43Q6ZSC3 357 aaKnown RBP5.74□□□□□ -1.49
LIMA1-214ENST00000552783 SPATA32Q96LK8 384 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 CLSTN2Q9H4D0 955 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 NAP1L2Q9ULW6 460 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-214ENST00000552783 RBM8AQ9Y5S9 174 aaKnown RBP5.74□□□□□ -1.49
LIMA1-214ENST00000552783 CYP46A1Q9Y6A2 500 aa5.74□□□□□ -1.49
LIMA1-214ENST00000552783 FANCGO15287 622 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 TOB2Q14106 344 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-214ENST00000552783 PTPN21Q16825 1174 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 CCDC30Q5VVM6 783 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 CREB3L3Q68CJ9 461 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 CNTROBQ8N137 903 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 IL17REQ8NFR9 667 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 EDC3Q96F86 508 aaKnown RBP5.73□□□□□ -1.49
LIMA1-214ENST00000552783 EYA1Q99502 592 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 GOLPH3LQ9H4A5 285 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 TLR7Q9NYK1 1049 aaKnown RBP5.73□□□□□ -1.49
LIMA1-214ENST00000552783 ZNF330Q9Y3S2 320 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-214ENST00000552783 NDUFB9Q9Y6M9 179 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 CEP170BQ9Y4F5 1589 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-214ENST00000552783 SYCP1Q15431 976 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 ESCO1Q5FWF5 840 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 KRT222Q8N1A0 295 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 EPC1Q9H2F5 836 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 C9orf78Q9NZ63 289 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-214ENST00000552783 PAXBP1Q9Y5B6 917 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 A0A0D9SFI3 127 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 CCDC69A6NI79 296 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 KCNQ3O43525 872 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 TAF7Q15545 349 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-214ENST00000552783 NBPF11Q86T75 865 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 ZNF589Q86UQ0 364 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-214ENST00000552783 ZNF397Q8NF99 534 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-214ENST00000552783 BICD2Q8TD16 824 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 LRRC2Q9BYS8 371 aa5.73□□□□□ -1.49
LIMA1-214ENST00000552783 ELP1O95163 1332 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 AOX1Q06278 1338 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 SLC27A2O14975 620 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 CSB-PGBD3P0DP91 1061 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 NMIQ13287 307 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-214ENST00000552783 PTPN14Q15678 1187 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 DHX40Q8IX18 779 aaKnown RBP5.72□□□□□ -1.49
LIMA1-214ENST00000552783 NFATC2IPQ8NCF5 419 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 FHOD1Q9Y613 1164 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 C3P01024 1663 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 NRKQ7Z2Y5 1582 aa5.72□□□□□ -1.49
LIMA1-214ENST00000552783 CCDC171Q6TFL3 1326 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms