RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 MCCP23508 829 aa13.45□□□□□ -0.26
CUX1-212ENST00000547394 PRPF40BQ6NWY9 871 aaKnown RBP13.45□□□□□ -0.26
CUX1-212ENST00000547394 NEUROD6Q96NK8 337 aa13.45□□□□□ -0.26
CUX1-212ENST00000547394 ATG3Q9NT62 314 aa13.45□□□□□ -0.26
CUX1-212ENST00000547394 AOX1Q06278 1338 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 TIMM10P62072 90 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 NMIQ13287 307 aaPredicted RBP13.44□□□□□ -0.26
CUX1-212ENST00000547394 LRRC24Q50LG9 513 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 ERC1Q8IUD2 1116 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 TCEANC2Q96MN5 208 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 SLC4A9Q96Q91 983 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 FSD1Q9BTV5 496 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 PUS3Q9BZE2 481 aaKnown RBP13.44□□□□□ -0.26
CUX1-212ENST00000547394 TAF6LQ9Y6J9 622 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 A0A0D9SFI3 127 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 CASP7P55210 303 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 ADCK5Q3MIX3 580 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 KIAA1211Q6ZU35 1233 aa13.44□□□□□ -0.26
CUX1-212ENST00000547394 GOLGB1Q14789 3259 aaKnown RBP13.43□□□□□ -0.26
CUX1-212ENST00000547394 FAM177BA6PVY3 158 aa13.43□□□□□ -0.26
CUX1-212ENST00000547394 FOXO4P98177 505 aa13.43□□□□□ -0.26
CUX1-212ENST00000547394 NKX1-1Q15270 411 aaPredicted RBP13.43□□□□□ -0.26
CUX1-212ENST00000547394 GPATCH3Q96I76 525 aa13.43□□□□□ -0.26
CUX1-212ENST00000547394 CWC25Q9NXE8 425 aaPredicted RBP13.43□□□□□ -0.26
CUX1-212ENST00000547394 SNX14Q9Y5W7 946 aa13.43□□□□□ -0.26
CUX1-212ENST00000547394 TTC41PQ6P2S7 1318 aa13.43□□□□□ -0.26
CUX1-212ENST00000547394 PRIM1P49642 420 aaKnown RBP13.43□□□□□ -0.26
CUX1-212ENST00000547394 HLFQ16534 295 aa13.43□□□□□ -0.26
CUX1-212ENST00000547394 MCTP1Q6DN14 999 aa13.43□□□□□ -0.26
CUX1-212ENST00000547394 DDX46Q7L014 1031 aaKnown RBP13.43□□□□□ -0.26
CUX1-212ENST00000547394 TUBGCP6Q96RT7 1819 aa13.43□□□□□ -0.26
CUX1-212ENST00000547394 GLI3P10071 1580 aa13.43□□□□□ -0.26
CUX1-212ENST00000547394 HSPA4P34932 840 aa13.42□□□□□ -0.26
CUX1-212ENST00000547394 CCDC129Q6ZRS4 1044 aa13.42□□□□□ -0.26
CUX1-212ENST00000547394 SEC62Q99442 399 aaKnown RBP13.42□□□□□ -0.26
CUX1-212ENST00000547394 RAD50Q92878 1312 aa13.42□□□□□ -0.26
CUX1-212ENST00000547394 KCNJ4P48050 445 aa13.42□□□□□ -0.26
CUX1-212ENST00000547394 TNNI3KQ59H18 835 aa13.42□□□□□ -0.26
CUX1-212ENST00000547394 ZNF589Q86UQ0 364 aaPredicted RBP13.42□□□□□ -0.26
CUX1-212ENST00000547394 TBC1D2BQ9UPU7 963 aa13.42□□□□□ -0.26
CUX1-212ENST00000547394 ZDHHC9Q9Y397 364 aa13.42□□□□□ -0.26
CUX1-212ENST00000547394 FPGT-TNNI3KV9GXZ4 949 aa13.42□□□□□ -0.26
CUX1-212ENST00000547394 KCPQ6ZWJ8 1503 aa13.42□□□□□ -0.26
CUX1-212ENST00000547394 HDAC5Q9UQL6 1122 aa13.42□□□□□ -0.26
CUX1-212ENST00000547394 CASTP20810 708 aaKnown RBP13.41□□□□□ -0.26
CUX1-212ENST00000547394 KCNQ4P56696 695 aa13.41□□□□□ -0.26
CUX1-212ENST00000547394 USP42Q9H9J4 1324 aaKnown RBP13.41□□□□□ -0.26
CUX1-212ENST00000547394 H7C1W4 665 aa13.41□□□□□ -0.26
CUX1-212ENST00000547394 BAG4O95429 457 aaKnown RBP13.41□□□□□ -0.26
CUX1-212ENST00000547394 NCLP19338 710 aaKnown RBP13.41□□□□□ -0.26
CUX1-212ENST00000547394 COPRSQ9NQ92 184 aa13.41□□□□□ -0.26
CUX1-212ENST00000547394 CIZ1Q9ULV3 898 aaPredicted RBP13.41□□□□□ -0.26
CUX1-212ENST00000547394 ZBTB1Q9Y2K1 713 aa13.41□□□□□ -0.26
CUX1-212ENST00000547394 ABCA3Q99758 1704 aa13.4□□□□□ -0.26
CUX1-212ENST00000547394 EP400Q96L91 3159 aa13.4□□□□□ -0.26
CUX1-212ENST00000547394 EVI5LQ96CN4 794 aa13.4□□□□□ -0.26
CUX1-212ENST00000547394 EXOC5O00471 708 aa13.4□□□□□ -0.26
CUX1-212ENST00000547394 LARGE1O95461 756 aa13.4□□□□□ -0.26
CUX1-212ENST00000547394 RABL6Q3YEC7 729 aaPredicted RBP13.4□□□□□ -0.26
CUX1-212ENST00000547394 JAKMIP1Q96N16 626 aaKnown RBP13.4□□□□□ -0.26
CUX1-212ENST00000547394 GBP4Q96PP9 640 aa13.4□□□□□ -0.26
CUX1-212ENST00000547394 AK2P54819 239 aa13.39□□□□□ -0.27
CUX1-212ENST00000547394 SMIM5Q71RC9 77 aa13.39□□□□□ -0.27
CUX1-212ENST00000547394 PANK2Q9BZ23 570 aa13.39□□□□□ -0.27
CUX1-212ENST00000547394 AFDNP55196 1824 aaKnown RBP13.39□□□□□ -0.27
CUX1-212ENST00000547394 ATG9AQ7Z3C6 839 aa13.39□□□□□ -0.27
CUX1-212ENST00000547394 SNRKQ9NRH2 765 aa13.39□□□□□ -0.27
CUX1-212ENST00000547394 PARP4Q9UKK3 1724 aaKnown RBP13.39□□□□□ -0.27
CUX1-212ENST00000547394 ARFGEF2Q9Y6D5 1785 aa13.39□□□□□ -0.27
CUX1-212ENST00000547394 DDX11L8A8MPP1 907 aa13.38□□□□□ -0.27
CUX1-212ENST00000547394 RBM8AQ9Y5S9 174 aaKnown RBP13.38□□□□□ -0.27
CUX1-212ENST00000547394 TOGARAM1Q9Y4F4 1720 aa13.38□□□□□ -0.27
CUX1-212ENST00000547394 EIF5BO60841 1220 aaKnown RBP13.38□□□□□ -0.27
CUX1-212ENST00000547394 GDPD2Q9HCC8 539 aa13.38□□□□□ -0.27
CUX1-212ENST00000547394 SHANK3Q9BYB0 1731 aa13.37□□□□□ -0.27
CUX1-212ENST00000547394 GOLIM4O00461 696 aa13.37□□□□□ -0.27
CUX1-212ENST00000547394 HSP90AB3PQ58FF7 597 aa13.37□□□□□ -0.27
CUX1-212ENST00000547394 RUFY3Q7L099 469 aa13.37□□□□□ -0.27
CUX1-212ENST00000547394 ABCC6O95255 1503 aa13.37□□□□□ -0.27
CUX1-212ENST00000547394 PRPF40AO75400 957 aaKnown RBP13.37□□□□□ -0.27
CUX1-212ENST00000547394 KIF6Q6ZMV9 814 aa13.37□□□□□ -0.27
CUX1-212ENST00000547394 CCDC171Q6TFL3 1326 aa13.37□□□□□ -0.27
CUX1-212ENST00000547394 STARD3NLO95772 234 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 ADORA1P30542 326 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 ANAPC15P60006 121 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 TCIRG1Q13488 830 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 NECAB1Q8N987 351 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 CCDC191Q8NCU4 936 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 ROBO1Q9Y6N7 1651 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 KCNQ2O43526 872 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 FAM182BQ5T319 152 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 PI16Q6UXB8 463 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 RUFY2Q8WXA3 655 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 DDX49Q9Y6V7 483 aaKnown RBP13.36□□□□□ -0.27
CUX1-212ENST00000547394 COL15A1P39059 1388 aa13.36□□□□□ -0.27
CUX1-212ENST00000547394 NHSL1Q5SYE7 1610 aa13.35□□□□□ -0.27
CUX1-212ENST00000547394 A0A0G2JLW4 131 aa13.35□□□□□ -0.27
CUX1-212ENST00000547394 CREB3L3Q68CJ9 461 aa13.35□□□□□ -0.27
CUX1-212ENST00000547394 GAS2L3Q86XJ1 694 aa13.35□□□□□ -0.27
CUX1-212ENST00000547394 TNS2Q63HR2 1409 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms