RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RRP7AQ9Y3A4 280 aaKnown RBP17.95■□□□□ 0.46
SS18-204ENST00000539244 THUMPD2Q9BTF0 503 aaKnown RBP17.94■□□□□ 0.46
SS18-204ENST00000539244 RNF123Q5XPI4 1314 aa17.94■□□□□ 0.46
SS18-204ENST00000539244 TMEM88BA6NKF7 163 aa17.93■□□□□ 0.46
SS18-204ENST00000539244 MYL6BP14649 208 aa17.93■□□□□ 0.46
SS18-204ENST00000539244 EAPPQ56P03 285 aaPredicted RBP17.93■□□□□ 0.46
SS18-204ENST00000539244 GIGYF2Q6Y7W6 1299 aaKnown RBP17.93■□□□□ 0.46
SS18-204ENST00000539244 LRP10Q7Z4F1 713 aa17.93■□□□□ 0.46
SS18-204ENST00000539244 JDP2Q8WYK2 163 aa17.93■□□□□ 0.46
SS18-204ENST00000539244 RPGRQ92834 1020 aaKnown RBP17.93■□□□□ 0.46
SS18-204ENST00000539244 CRAMP1Q96RY5 1269 aa17.93■□□□□ 0.46
SS18-204ENST00000539244 COL4A5P29400 1685 aa17.93■□□□□ 0.46
SS18-204ENST00000539244 NTSR2O95665 410 aa17.92■□□□□ 0.46
SS18-204ENST00000539244 GPTP24298 496 aa17.92■□□□□ 0.46
SS18-204ENST00000539244 SUSD4Q5VX71 490 aa17.92■□□□□ 0.46
SS18-204ENST00000539244 ZBTB3Q9H5J0 574 aa17.92■□□□□ 0.46
SS18-204ENST00000539244 MAPK8IP3Q9UPT6 1336 aa17.92■□□□□ 0.46
SS18-204ENST00000539244 LTBP1Q14766 1721 aa17.9■□□□□ 0.46
SS18-204ENST00000539244 PARP10Q53GL7 1025 aa17.9■□□□□ 0.46
SS18-204ENST00000539244 CNTROBQ8N137 903 aa17.9■□□□□ 0.46
SS18-204ENST00000539244 RBM17Q96I25 401 aaKnown RBP17.9■□□□□ 0.46
SS18-204ENST00000539244 BABAM1Q9NWV8 329 aa17.9■□□□□ 0.46
SS18-204ENST00000539244 CLEC11AQ9Y240 323 aa17.9■□□□□ 0.46
SS18-204ENST00000539244 RASSF10A6NK89 507 aa17.89■□□□□ 0.45
SS18-204ENST00000539244 FOXN1O15353 648 aa17.89■□□□□ 0.45
SS18-204ENST00000539244 CAPN15O75808 1086 aa17.89■□□□□ 0.45
SS18-204ENST00000539244 VEGFBP49765 207 aa17.89■□□□□ 0.45
SS18-204ENST00000539244 EIF6P56537 245 aaKnown RBP17.89■□□□□ 0.45
SS18-204ENST00000539244 PDIA6Q15084 440 aa17.89■□□□□ 0.45
SS18-204ENST00000539244 PPP1R42Q7Z4L9 355 aa17.89■□□□□ 0.45
SS18-204ENST00000539244 TSPYL4Q9UJ04 414 aa17.89■□□□□ 0.45
SS18-204ENST00000539244 PPEF1O14829 653 aaPredicted RBP17.88■□□□□ 0.45
SS18-204ENST00000539244 SLC10A5Q5PT55 438 aa17.88■□□□□ 0.45
SS18-204ENST00000539244 MAP1SQ66K74 1059 aaPredicted RBP17.88■□□□□ 0.45
SS18-204ENST00000539244 C3orf67Q6ZVT6 689 aa17.88■□□□□ 0.45
SS18-204ENST00000539244 PRDM10Q9NQV6 1147 aa17.88■□□□□ 0.45
SS18-204ENST00000539244 SCNN1DP51172 638 aa17.87■□□□□ 0.45
SS18-204ENST00000539244 LARGE2Q8N3Y3 721 aa17.87■□□□□ 0.45
SS18-204ENST00000539244 NLRP3Q96P20 1036 aa17.87■□□□□ 0.45
SS18-204ENST00000539244 VPS33BQ9H267 617 aa17.87■□□□□ 0.45
SS18-204ENST00000539244 ANKRD36CQ5JPF3 1778 aa17.86■□□□□ 0.45
SS18-204ENST00000539244 LMOD1P29536 600 aaPredicted RBP17.86■□□□□ 0.45
SS18-204ENST00000539244 CTCFP49711 727 aaPredicted RBP17.85■□□□□ 0.45
SS18-204ENST00000539244 RIPK4P57078 832 aa17.85■□□□□ 0.45
SS18-204ENST00000539244 SLC51AQ86UW1 340 aa17.85■□□□□ 0.45
SS18-204ENST00000539244 UTP14AQ9BVJ6 771 aaKnown RBP17.85■□□□□ 0.45
SS18-204ENST00000539244 WBP1LQ9NX94 342 aa17.85■□□□□ 0.45
SS18-204ENST00000539244 ATP6V0A2Q9Y487 856 aa17.85■□□□□ 0.45
SS18-204ENST00000539244 GJA3Q9Y6H8 435 aa17.85■□□□□ 0.45
SS18-204ENST00000539244 EPS15P42566 896 aa17.84■□□□□ 0.45
SS18-204ENST00000539244 PROSER3Q2NL68 480 aa17.84■□□□□ 0.45
SS18-204ENST00000539244 DEFB115Q30KQ5 88 aa17.84■□□□□ 0.45
SS18-204ENST00000539244 USP50Q70EL3 339 aaPredicted RBP17.84■□□□□ 0.45
SS18-204ENST00000539244 NIM1KQ8IY84 436 aa17.84■□□□□ 0.45
SS18-204ENST00000539244 RTFDC1Q9BY42 306 aaPredicted RBP17.84■□□□□ 0.45
SS18-204ENST00000539244 DDX21Q9NR30 783 aaKnown RBP eCLIP17.84■□□□□ 0.45
SS18-204ENST00000539244 LAMB2P55268 1798 aa17.84■□□□□ 0.45
SS18-204ENST00000539244 ABCC4O15439 1325 aa17.83■□□□□ 0.44
SS18-204ENST00000539244 EIF2S2P20042 333 aaKnown RBP17.83■□□□□ 0.44
SS18-204ENST00000539244 TMPOP42166 694 aaKnown RBP17.83■□□□□ 0.44
SS18-204ENST00000539244 LMOD3Q0VAK6 560 aa17.83■□□□□ 0.44
SS18-204ENST00000539244 RALBP1Q15311 655 aa17.83■□□□□ 0.44
SS18-204ENST00000539244 AIDAQ96BJ3 306 aa17.83■□□□□ 0.44
SS18-204ENST00000539244 PPIP5K2O43314 1243 aa17.82■□□□□ 0.44
SS18-204ENST00000539244 ANXA1P04083 346 aa17.82■□□□□ 0.44
SS18-204ENST00000539244 HSP90AB3PQ58FF7 597 aa17.82■□□□□ 0.44
SS18-204ENST00000539244 TMX4Q9H1E5 349 aaPredicted RBP17.82■□□□□ 0.44
SS18-204ENST00000539244 THSD7BQ9C0I4 1608 aa17.82■□□□□ 0.44
SS18-204ENST00000539244 TRPM7Q96QT4 1865 aa17.82■□□□□ 0.44
SS18-204ENST00000539244 WDR33Q9C0J8 1336 aaKnown RBP17.81■□□□□ 0.44
SS18-204ENST00000539244 TCERG1O14776 1098 aaKnown RBP17.81■□□□□ 0.44
SS18-204ENST00000539244 BBOX1O75936 387 aa17.81■□□□□ 0.44
SS18-204ENST00000539244 AOC3Q16853 763 aa17.81■□□□□ 0.44
SS18-204ENST00000539244 NLRP10Q86W26 655 aa17.81■□□□□ 0.44
SS18-204ENST00000539244 SUPT20HQ8NEM7 779 aa17.81■□□□□ 0.44
SS18-204ENST00000539244 COPS6Q7L5N1 327 aa17.8■□□□□ 0.44
SS18-204ENST00000539244 SP8Q8IXZ3 490 aa17.8■□□□□ 0.44
SS18-204ENST00000539244 GPRC5DQ9NZD1 345 aa17.8■□□□□ 0.44
SS18-204ENST00000539244 MAP2K1Q02750 393 aaPredicted RBP17.79■□□□□ 0.44
SS18-204ENST00000539244 CXCL9Q07325 125 aa17.79■□□□□ 0.44
SS18-204ENST00000539244 TCIRG1Q13488 830 aa17.79■□□□□ 0.44
SS18-204ENST00000539244 XAGE3Q8WTP9 111 aa17.79■□□□□ 0.44
SS18-204ENST00000539244 ADARB2Q9NS39 739 aaKnown RBP17.79■□□□□ 0.44
SS18-204ENST00000539244 ZNRF3Q9ULT6 936 aa17.79■□□□□ 0.44
SS18-204ENST00000539244 ABT1Q9ULW3 272 aaKnown RBP17.79■□□□□ 0.44
SS18-204ENST00000539244 CDHR2Q9BYE9 1310 aa17.78■□□□□ 0.44
SS18-204ENST00000539244 CHL1O00533 1208 aa17.78■□□□□ 0.44
SS18-204ENST00000539244 KIAA2012Q0VF49 1180 aa17.78■□□□□ 0.44
SS18-204ENST00000539244 SH3TC1Q8TE82 1336 aa17.77■□□□□ 0.44
SS18-204ENST00000539244 HSPA8P11142 646 aaKnown RBP17.77■□□□□ 0.44
SS18-204ENST00000539244 HCLS1P14317 486 aaPredicted RBP17.77■□□□□ 0.44
SS18-204ENST00000539244 LBX1P52954 281 aa17.77■□□□□ 0.44
SS18-204ENST00000539244 FMR1Q06787 632 aaKnown RBP eCLIP17.77■□□□□ 0.44
SS18-204ENST00000539244 CST9Q5W186 159 aa17.77■□□□□ 0.44
SS18-204ENST00000539244 DPP8Q6V1X1 898 aaPredicted RBP17.77■□□□□ 0.44
SS18-204ENST00000539244 MPNDQ8N594 471 aa17.77■□□□□ 0.44
SS18-204ENST00000539244 TRMT112Q9UI30 125 aaKnown RBP17.77■□□□□ 0.44
SS18-204ENST00000539244 LRRC37AA6NMS7 1700 aa17.77■□□□□ 0.44
SS18-204ENST00000539244 HOXB7P09629 217 aa17.76■□□□□ 0.43
SS18-204ENST00000539244 ECE1P42892 770 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms